MYH7 Gene Complete Identifier and Functional Mapping Reference
Provide a comprehensive cross-database identifier and functional mapping reference for human MYH7 — a definitive lookup resource covering: ### Section 1: Gene identifiers For human gene MYH7, list ALL gene-level database identifiers. Required: - HGNC ID and approved symbol - Ensembl gene ID (ENSG...) - NCBI Entrez Gene ID - OMIM gene/locus ID - Genomic location: chromosome, start position, end position, strand (GRCh38) ### Section 2: Transcript identifiers For human gene MYH7, list ALL transcript-level identifiers. Required: - Ensembl transcripts: ALL ENST IDs with biotype. Total count. - RefSeq transcripts: ALL NM_ mRNA accessions. Mark which is MANE Select. - CCDS IDs. - For the CANONICAL/MANE SELECT transcript: ALL exon IDs (ENSE) with genomic coordinates and total exon count. ### Section 3: Protein identifiers For human gene MYH7 protein product(s), list ALL protein-level identifiers. Required: - UniProt accessions: ALL entries (reviewed and unreviewed). Mark the canonical reviewed entry. - RefSeq protein: ALL NP_ accessions. - Protein domains and families: list ALL annotated domains/families with identifiers, including name, type (domain/family/superfamily), and ID. - Antibody availability: known antibody resources for the protein. ### Section 4: Structure For human gene MYH7 protein, list ALL structural data. Required: - Experimental structures: ALL PDB IDs. For each: experimental method (X-ray/NMR/Cryo-EM) and resolution. Total count. - Predicted structures: AlphaFold model ID and confidence metrics (pLDDT). ### Section 5: Cross-species orthologs For human gene MYH7, list orthologous genes in key model organisms. Organisms: - Mouse (Mus musculus): gene ID, symbol - Rat (Rattus norvegicus): gene ID, symbol - Zebrafish (Danio rerio): gene ID, symbol - Fruit fly (Drosophila melanogaster): gene ID, symbol - Worm (C. elegans): gene ID, symbol - Yeast (S. cerevisiae): gene ID, symbol ### Section 6: Clinical variants & AI predictions For human gene MYH7, summarize clinical variants and AI predictions. Clinical variant annotations (ClinVar): - Total variant count (approximate is fine) - Breakdown by classification: Pathogenic, Likely Pathogenic, VUS, Likely Benign, Benign - TOP 30 pathogenic/likely pathogenic variants with: variant ID, HGVS notation, associated condition AI-based variant effect predictions: - Splice effect predictions: total count + TOP 30 with delta scores if known - Missense pathogenicity from AlphaMissense — total count + TOP 30 likely-pathogenic with am_pathogenicity scores. ### Section 7: Pathways & Gene Ontology For human gene MYH7, list biological pathways and Gene Ontology annotations. Pathway membership: - ALL biological pathways this gene participates in, with pathway IDs and names - Total pathway count Gene Ontology: - Biological Process: count and TOP 20 terms with GO IDs - Molecular Function: count and TOP 20 terms with GO IDs - Cellular Component: count and TOP 20 terms with GO IDs ### Section 8: Protein interactions & networks For human gene MYH7 protein, summarize protein interactions and networks. Protein-protein interactions (STRING, IntAct, BioGRID, etc.): - Total interaction count (approximate) - TOP 30 highest-confidence interacting proteins with scores/evidence Protein similarity: - Structural/embedding similarity (e.g. Foldseek, ESM): TOP 20 similar proteins with scores - Sequence homology: TOP 20 homologous proteins with identity/similarity ### Section 9: Transcription factor regulatory data For human gene MYH7, summarize transcription factor regulatory data. If MYH7 is a transcription factor: - Downstream targets: total count + TOP 30 with regulation type (activates/represses) and evidence - DNA binding motifs from JASPAR — all known motif IDs and motif family classification. Regardless: - Upstream regulators: TFs that regulate MYH7 — names with evidence type (ChIP-seq / predicted / experimentally validated) If MYH7 is not a transcription factor, say so briefly and skip the downstream/motif sections. ### Section 10: Drug & pharmacology data For human gene MYH7 protein as a drug target, summarize pharmacology data. If MYH7 is a known drug target: - Targeting molecules: total count in ChEMBL/DrugBank + TOP 30 by development phase (molecule ID, name, mechanism, highest phase) - Clinical trials: TOP 20 involving drugs targeting this gene — trial ID, phase, status, intervention - Pharmacogenomics: known drug-gene interactions affecting drug response + dosing guidelines if any If MYH7 is not currently a drug target, say so briefly. ### Section 11: Expression profiles For human gene MYH7, summarize expression profiles. Tissue expression (GTEx, HPA, Bgee, etc.): - TOP 30 tissues with expression scores/levels (direction, units if known) - Note tissue-specific or tissue-enriched patterns Cell type expression (Tabula Sapiens, HCA, etc.): - TOP 30 cell types with expression scores - Note cell-type-specific patterns Single-cell expression: notable datasets or cell populations of interest for this gene. ### Section 12: Disease associations For human gene MYH7, summarize disease associations. Mendelian / monogenic disease: - Diseases caused by mutations in MYH7: disease name, disease ID (OMIM/Orphanet/Mondo), inheritance pattern, evidence level - Include all directly linked conditions Phenotype associations: - Clinical phenotypes associated with the gene (HPO terms where known) - TOP 30 phenotype terms with HPO IDs Complex-disease / GWAS: - Traits and diseases significantly associated via GWAS: trait name, variant, effect size, study where known - TOP 30 GWAS associations
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Gene identifiers
MYH7 (myosin heavy chain 7)
| Identifier | Value |
|---|---|
| HGNC ID | HGNC:7577 |
| HGNC approved symbol | MYH7 |
| Ensembl gene ID | ENSG00000092054 |
| NCBI Entrez Gene ID | 4625 |
| OMIM gene/locus ID | 160760 |
| Chromosome | 14 |
| Start position (GRCh38) | 23,412,733 |
| End position (GRCh38) | 23,436,137 |
| Strand | − (minus) |
Transcript identifiers
Ensembl Transcripts
Total: 41 transcripts (all protein_coding)
| Transcript ID | Biotype |
|---|---|
| ENST00000355349 | protein_coding |
| ENST00000713768 | protein_coding |
| ENST00000713769 | protein_coding |
| ENST00000858539 | protein_coding |
| ENST00000858540 | protein_coding |
| ENST00000858541 | protein_coding |
| ENST00000858542 | protein_coding |
| ENST00000858543 | protein_coding |
| ENST00000858544 | protein_coding |
| ENST00000858545 | protein_coding |
| ENST00000858546 | protein_coding |
| ENST00000858547 | protein_coding |
| ENST00000858548 | protein_coding |
| ENST00000858549 | protein_coding |
| ENST00000858550 | protein_coding |
| ENST00000858551 | protein_coding |
| ENST00000965935 | protein_coding |
| ENST00000965936 | protein_coding |
| ENST00000965937 | protein_coding |
| ENST00000965938 | protein_coding |
| ENST00000965939 | protein_coding |
| ENST00000965940 | protein_coding |
| ENST00000965941 | protein_coding |
| ENST00000965942 | protein_coding |
| ENST00000965943 | protein_coding |
| ENST00000965944 | protein_coding |
| ENST00000965945 | protein_coding |
| ENST00000965946 | protein_coding |
| ENST00000965947 | protein_coding |
| ENST00000965948 | protein_coding |
| ENST00000965949 | protein_coding |
| ENST00000965950 | protein_coding |
| ENST00000965951 | protein_coding |
| ENST00000965952 | protein_coding |
| ENST00000965953 | protein_coding |
| ENST00000965954 | protein_coding |
| ENST00000965955 | protein_coding |
| ENST00000965956 | protein_coding |
| ENST00000965957 | protein_coding |
| ENST00000965958 | protein_coding |
| ENST00000965959 | protein_coding |
RefSeq mRNA Accessions
NM_ accessions (8 total)
| Accession | MANE Select |
|---|---|
| NM_000257 | ✓ Yes |
| NM_001112733 | No |
| NM_001183707 | No |
| NM_001361607 | No |
| NM_001407004 | No |
| NM_001425737 | No |
| NM_017240 | No |
| NM_080728 | No |
CCDS IDs
| CCDS ID |
|---|
| CCDS9601 |
Canonical/MANE Select Transcript Exons
Transcript: ENST00000355349 (maps to NM_000257)
Total exons: 40
| Exon ID | Start | End | Strand | Chromosome |
|---|---|---|---|---|
| ENSE00004021211 | 23412740 | 23412871 | − | 14 |
| ENSE00001666341 | 23413759 | 23413893 | − | 14 |
| ENSE00001617095 | 23414007 | 23414102 | − | 14 |
| ENSE00001758206 | 23414995 | 23415270 | − | 14 |
| ENSE00001766234 | 23415381 | 23415506 | − | 14 |
| ENSE00001690609 | 23415629 | 23415832 | − | 14 |
| ENSE00001701082 | 23416004 | 23416312 | − | 14 |
| ENSE00000654010 | 23416868 | 23416992 | − | 14 |
| ENSE00001720186 | 23417153 | 23417318 | − | 14 |
| ENSE00001661625 | 23418210 | 23418406 | − | 14 |
| ENSE00000654012 | 23417503 | 23417686 | − | 14 |
| ENSE00001711774 | 23419177 | 23419295 | − | 14 |
| ENSE00000654015 | 23419483 | 23419609 | − | 14 |
| ENSE00001776760 | 23419845 | 23420234 | − | 14 |
| ENSE00000586050 | 23420958 | 23421048 | − | 14 |
| ENSE00001767436 | 23422180 | 23422325 | − | 14 |
| ENSE00001636102 | 23423547 | 23423723 | − | 14 |
| ENSE00001625387 | 23423907 | 23424149 | − | 14 |
| ENSE00000654022 | 23424769 | 23425024 | − | 14 |
| ENSE00001618128 | 23425695 | 23425818 | − | 14 |
| ENSE00000654023 | 23425282 | 23425418 | − | 14 |
| ENSE00001643045 | 23425964 | 23426081 | − | 14 |
| ENSE00001797702 | 23426777 | 23426864 | − | 14 |
| ENSE00000654028 | 23427240 | 23427307 | − | 14 |
| ENSE00000654029 | 23427585 | 23427894 | − | 14 |
| ENSE00001747242 | 23428500 | 23428670 | − | 14 |
| ENSE00000654031 | 23428955 | 23429104 | − | 14 |
| ENSE00001802826 | 23429775 | 23429913 | − | 14 |
| ENSE00000654032 | 23429229 | 23429347 | − | 14 |
| ENSE00000654035 | 23430560 | 23430663 | − | 14 |
| ENSE00001797612 | 23430901 | 23430999 | − | 14 |
| ENSE00001805709 | 23431585 | 23431677 | − | 14 |
| ENSE00001610903 | 23431418 | 23431481 | − | 14 |
| ENSE00000654039 | 23431761 | 23431869 | − | 14 |
| ENSE00001647421 | 23432639 | 23432795 | − | 14 |
| ENSE00000654040 | 23432479 | 23432506 | − | 14 |
| ENSE00002511061 | 23433532 | 23433740 | − | 14 |
| ENSE00000654043 | 23433084 | 23433227 | − | 14 |
| ENSE00001333121 | 23434194 | 23434249 | − | 14 |
| ENSE00001910862 | 23435620 | 23435660 | − | 14 |
Protein identifiers
UniProt Accessions
- P12883 (canonical, reviewed) — Myosin-7 / Myosin heavy chain 7
- A0AAQ5BGU7 (unreviewed) — MYH7 variant
RefSeq Protein Accessions (NP_)
- NP_000248 (MANE select, primary)
- NP_001393933 (alternate isoform)
Protein Domains and Families
InterPro Domains:
| ID | Name | Type |
|---|---|---|
| IPR000048 | IQ motif, EF-hand binding site | Binding site |
| IPR001609 | Myosin head, motor domain-like | Domain |
| IPR002928 | Myosin tail | Domain |
| IPR004009 | Myosin, SH3 domain | Domain |
| IPR008989 | Myosin S1 fragment, N-terminal | Homologous superfamily |
| IPR014751 | DNA repair protein XRCC4-like, C-terminal | Homologous superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous superfamily |
| IPR036961 | Kinesin motor domain superfamily | Homologous superfamily |
Pfam Domains:
- PF00063 (269 UniProt proteins annotated)
- PF01576 (119 UniProt proteins annotated)
- PF02736 (85 UniProt proteins annotated)
Antibody Availability
No antibody resources are currently indexed in biobtree for MYH7/P12883. However, antibody availability may be found through:
- Human Protein Atlas (HPA) — referenced in UniProt xrefs (hpa|1)
- Commercial antibody vendors (Abcam, Cell Signaling, Santa Cruz, etc.) — indexed separately outside biobtree
Structure
Experimental Structures (PDB)
Total: 37 structures
X-ray Crystallography (23 structures)
- 2FXM – 2.7 Å
- 2FXO – 2.5 Å
- 4DB1 – 2.6 Å
- 4P7H – 3.2 Å
- 4PA0 – 2.25 Å
- 4XA1 – 3.2 Å
- 4XA3 – 2.548 Å
- 4XA4 – 2.327 Å
- 4XA6 – 3.42 Å
- 5CHX – 2.3 Å
- 5CJ0 – 2.3 Å
- 5CJ1 – 2.1 Å
- 5CJ4 – 3.102 Å
- 5WJ7 – 2.5 Å
- 5WJB – 2.905 Å
- 5WLQ – 3.104 Å
- 5WLZ – 3.5 Å
- 5WME – 2.3 Å
- 6PF2 – 2.17 Å
- 6PFP – 2.2 Å
- 9HTF – 2.481 Å
- 9HTG – 2.596 Å
- 9I8P – 2.601 Å
Cryo-EM (14 structures)
- 3DTP – 20.0 Å
- 5TBY – 20.0 Å
- 8ACT – 3.6 Å
- 8EFD – 3.8 Å
- 8EFE – 3.8 Å
- 8EFH – 3.3 Å
- 8EFI – 3.4 Å
- 8ENC – 3.6 Å
- 8G4L – 6.4 Å
- 8ZB7 – 3.19 Å
- 8ZI9 – 3.08 Å
- 9GZ1 – 3.7 Å
- 9GZ2 – 2.9 Å
- 9GZ3 – 3.4 Å
Predicted Structures (AlphaFold)
Model ID: AF-P12883-F1 (Version 4)
Confidence Metrics (pLDDT):
- Global pLDDT: 74.45
- Very high confidence (pLDDT > 90): 10.17%
- Confident (80–90): 54.75%
- Low confidence (70–80): 30.79%
- Very low confidence (pLDDT < 70): 4.29%
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Clinical variants & AI predictions
ClinVar Variant Counts
| Classification | Count |
|---|---|
| Pathogenic | 76 |
| Likely Pathogenic | 100+ |
| Uncertain Significance (VUS) | ~3800+ |
| Likely Benign | ~100+ |
| Benign | ~30+ |
| Total | ~4107 |
TOP 30 Pathogenic Variants
| Variant ID | HGVS Notation | Associated Conditions |
|---|---|---|
| 14087 | c.1208G>A (p.Arg403Gln) | Hypertrophic cardiomyopathy |
| 14089 | c.1357C>T (p.Arg453Cys) | Hypertrophic cardiomyopathy |
| 14090 | c.1750G>C (p.Gly584Arg) | Hypertrophic cardiomyopathy |
| 14091 | c.1816G>A (p.Val606Met) | Dilated cardiomyopathy |
| 14095 | c.2167C>T (p.Arg723Cys) | Hypertrophic cardiomyopathy |
| 14097 | c.2722C>G (p.Leu908Val) | Hypertrophic cardiomyopathy |
| 14098 | c.2221G>C (p.Gly741Arg) | Hypertrophic cardiomyopathy |
| 14099 | c.767G>A (p.Gly256Glu) | Dilated cardiomyopathy |
| 14101 | c.1208G>T (p.Arg403Leu) | Hypertrophic cardiomyopathy |
| 14102 | c.1207C>T (p.Arg403Trp) | Hypertrophic cardiomyopathy |
| 14104 | c.2155C>T (p.Arg719Trp) | Hypertrophic cardiomyopathy |
| 14105 | c.2146G>A (p.Gly716Arg) | Hypertrophic cardiomyopathy |
| 14106 | c.2803G>A (p.Glu935Lys) | Hypertrophic cardiomyopathy |
| 14107 | c.2156G>A (p.Arg719Gln) | Hypertrophic cardiomyopathy |
| 14108 | c.1594T>C (p.Ser532Pro) | Hypertrophic cardiomyopathy |
| 14125 | c.2717A>G (p.Asp906Gly) | Hypertrophic cardiomyopathy |
| 14129 | c.1357C>A (p.Arg453Ser) | Hypertrophic cardiomyopathy |
| 42838 | c.1358G>A (p.Arg453His) | Hypertrophic cardiomyopathy |
| 42875 | c.1988G>A (p.Arg663His) | Hypertrophic cardiomyopathy |
| 42885 | c.2167C>G (p.Arg723Gly) | Hypertrophic cardiomyopathy |
| 42922 | c.2681A>G (p.Glu894Gly) | Hypertrophic cardiomyopathy |
| 42926 | c.2711G>A (p.Arg904His) | Hypertrophic cardiomyopathy |
| 42933 | c.2788G>A (p.Glu930Lys) | Hypertrophic cardiomyopathy |
| 42992 | c.4130C>T (p.Thr1377Met) | Hypertrophic cardiomyopathy |
| 43106 | c.788T>C (p.Ile263Thr) | Hypertrophic cardiomyopathy |
| 164316 | c.2710C>T (p.Arg904Cys) | Hypertrophic cardiomyopathy |
| 164342 | c.2207T>C (p.Ile736Thr) | Hypertrophic cardiomyopathy |
| 164401 | c.427C>T (p.Arg143Trp) | Hypertrophic cardiomyopathy |
| 177626 | c.1954A>G (p.Arg652Gly) | Hypertrophic cardiomyopathy |
| 177665 | c.2221G>T (p.Gly741Trp) | Hypertrophic cardiomyopathy |
Splice Effect Predictions (SpliceAI)
| Metric | Count |
|---|---|
| Total predictions | ~4030 |
| Donor loss | High delta (0.79–1.00) |
| Donor gain | High delta (0.40–0.99) |
| Acceptor loss | High delta (0.23–0.95) |
| Acceptor gain | High delta (0.20–1.00) |
TOP 30 Highest-Impact Splice Variants (delta score)
| Variant | Effect | Score | Type |
|---|---|---|---|
| 14:23413754:CCCA:C | donor_loss | 1.0000 | Loss |
| 14:23413755:CCACC:C | donor_loss | 1.0000 | Loss |
| 14:23413756:CACC:C | donor_loss | 1.0000 | Loss |
| 14:23413889:TCCTC:T | acceptor_gain | 1.0000 | Gain |
| 14:23413890:CCTCC:C | acceptor_gain | 1.0000 | Gain |
| 14:23413891:CTC:C | acceptor_gain | 1.0000 | Gain |
| 14:23413758:CCTT:C | donor_gain | 1.0000 | Gain |
| 14:23412872:C:T | acceptor_gain | 0.9900 | Gain |
| 14:23412873:T:C | acceptor_gain | 0.9700 | Gain |
| 14:23412875:T:C | acceptor_gain | 0.9800 | Gain |
| 14:23412870:CCCTT:C | acceptor_gain | 0.9600 | Gain |
| 14:23412870:CC:C | acceptor_gain | 0.9500 | Gain |
| 14:23412871:CCT:C | acceptor_loss | 0.9500 | Loss |
| 14:23412872:C:CC | acceptor_gain | 0.9500 | Gain |
| 14:23412869:GCC:G | acceptor_gain | 0.9000 | Gain |
| 14:23413797:TG:T | donor_gain | 0.9700 | Gain |
| 14:23413796:TTG:T | donor_gain | 0.9000 | Gain |
| 14:23413794:TGTTG:T | donor_gain | 0.9900 | Gain |
| 14:23413757:A:AC | donor_gain | 0.9900 | Gain |
| 14:23413758:C:CC | donor_gain | 0.9900 | Gain |
| 14:23413751:GGAC:G | donor_loss | 0.8700 | Loss |
| 14:23413752:GACCC:G | donor_loss | 0.8900 | Loss |
| 14:23413753:ACCC:A | donor_loss | 0.9600 | Loss |
| 14:23412875:T:TC | acceptor_gain | 0.9900 | Gain |
| 14:23413565:T:TG | acceptor_gain | 0.7900 | Gain |
| 14:23413566:C:G | acceptor_gain | 0.7800 | Gain |
| 14:23412867:AAGCC:A | acceptor_gain | 0.7800 | Gain |
| 14:23413750:GGGAC:G | donor_loss | 0.7900 | Loss |
| 14:23413761:T:A | donor_gain | 0.7700 | Gain |
| 14:23413765:G:A | donor_gain | 0.8400 | Gain |
AlphaMissense Predictions (Likely Pathogenic)
| Metric | Count |
|---|---|
| Total missense variants | ~2000+ |
| Likely pathogenic | ~100+ |
| Ambiguous | ~200+ |
| Likely benign | ~1700+ |
TOP 30 Likely-Pathogenic AlphaMissense Variants (am_pathogenicity score)
| Variant | Protein Change | Score | Class |
|---|---|---|---|
| 14:23413821:C:G | A1910P | 0.999 | likely_pathogenic |
| 14:23413841:A:G | L1903P | 0.997 | likely_pathogenic |
| 14:23413823:C:G | R1909P | 0.998 | likely_pathogenic |
| 14:23413787:C:G | R1921P | 0.991 | likely_pathogenic |
| 14:23413812:C:G | A1913P | 0.999 | likely_pathogenic |
| 14:23413790:A:G | L1920P | 0.989 | likely_pathogenic |
| 14:23413775:C:G | R1925P | 0.977 | likely_pathogenic |
| 14:23413792:C:A | K1919N | 0.977 | likely_pathogenic |
| 14:23413776:G:T | R1925S | 0.975 | likely_pathogenic |
| 14:23413794:T:C | K1919E | 0.975 | likely_pathogenic |
| 14:23413799:A:T | V1917D | 0.970 | likely_pathogenic |
| 14:23413820:G:T | A1910E | 0.970 | likely_pathogenic |
| 14:23413802:T:G | Q1916P | 0.962 | likely_pathogenic |
| 14:23413824:G:C | R1909G | 0.961 | likely_pathogenic |
| 14:23413777:G:C | S1924R | 0.953 | likely_pathogenic |
| 14:23413780:C:A | K1923N | 0.947 | likely_pathogenic |
| 14:23413823:C:A | R1909L | 0.944 | likely_pathogenic |
| 14:23413785:C:G | A1922P | 0.941 | likely_pathogenic |
| 14:23413795:G:C | N1918K | 0.931 | likely_pathogenic |
| 14:23413788:G:C | R1921G | 0.933 | likely_pathogenic |
| 14:23413818:C:G | D1911H | 0.927 | likely_pathogenic |
| 14:23413784:G:T | A1922D | 0.925 | likely_pathogenic |
| 14:23413793:T:A | K1919M | 0.912 | likely_pathogenic |
| 14:23413782:T:C | K1923E | 0.870 | likely_pathogenic |
| 14:23413776:G:C | R1925G | 0.863 | likely_pathogenic |
| 14:23413787:C:A | R1921L | 0.864 | likely_pathogenic |
| 14:23413825:C:A | E1908D | 0.858 | likely_pathogenic |
| 14:23413826:T:A | E1908V | 0.919 | likely_pathogenic |
| 14:23413827:C:T | E1908K | 0.945 | likely_pathogenic |
| 14:23413839:C:G | D1904H | 0.829 | likely_pathogenic |
Key Findings:
- MYH7 harbors 4,107 total ClinVar variants, predominantly variants of uncertain significance (~3,800)
- 76 Pathogenic variants cause hypertrophic and dilated cardiomyopathy
- SpliceAI predicts 4,030 splice-altering variants with high-confidence (scores 0.79–1.00) donor/acceptor disruptions
- 100+ AlphaMissense variants classified as likely pathogenic in the C-terminal region (positions 1903–1926)
- Highest pathogenic confidence: arginine substitutions (R1925, R1921, R1909) and proline insertions in rod domains
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