Is ABCC8 p.Val607Met (c.1819G>A) pathogenic?

ABCC8 p.Val607Met (c.1819G>A) is classified Likely pathogenic in ABCC8 (ClinVar, Multiple submitters, 4 submitters; last evaluated 2025-07-01). AlphaMissense: likely benign (0.3161); Very rare (popmax 0.00223%, eas); Associated with Hereditary hyperinsulinism.

What condition is associated with ABCC8 p.Val607Met (c.1819G>A)?

ABCC8 p.Val607Met (c.1819G>A) is associated with Hereditary hyperinsulinism, type 2 diabetes mellitus, hypoglycemia, leucine-induced (ClinVar).

How common is ABCC8 p.Val607Met (c.1819G>A) in the general population?

ABCC8 p.Val607Met (c.1819G>A) is very rare (popmax 0.00223%, eas) (gnomAD).

What do computational predictors say about ABCC8 p.Val607Met (c.1819G>A)?

AlphaMissense predicts likely benign (score 0.3161) — an in-silico prediction, not a clinical call.

ABCC8 p.Val607Met

c.1819G>A · rs377405677 · VCV2443080

Likely pathogenic Multiple submitters

Classification

Likely pathogenic

ClinVar

Review

Multiple submitters ★★☆☆

ClinVar · 4 submitters

AlphaMissense

likely benign

0.3161 · ACMG-weighted

gnomAD v4.1

Rare

very rare (popmax 0.00223%, eas)

Missense predictors

1/3 damaging

AlphaMissense, REVEL, SaProt

Conditions

Hereditary hyperinsulinism

Computational evidence

Protein change
AlphaMissense	0.3161	likely benign ⚠ discordant with ClinVar
REVEL	0.778	moderately pathogenic-leaning
SaProt	LLR -7.26	tolerated
⇒ REVEL calls this damaging; AlphaMissense and SaProt do not.
Splicing
SpliceAI	—	not assessed · no allele here is in the release
Constraint at this position
Conservation	phyloP 7.6	GERP 2.1, phastCons 1
Regional constraint	o/e 0.84	unconstrained · MANE · 84 kb · p 1.4e-12 · regional, not allelic
Overall
CADD	30.0	PHRED · no single calibrated threshold — expert panels disagree

AlphaMissense carries the ACMG weight for missense; REVEL and SaProt are independent agreement signals.

Population frequency

gnomAD v4.1 · exomes + genomes

Grpmax group 0.00223% East Asian · 1/44,890 alleles

Filtering AF 0.000365% ClinGen BA1/BS1 input FAF95, joint · FAF99 0.000137%

Overall 0.000434% 7/1,612,506 alleles · very rare

Ancestry group	Frequency	1 in
East Asiangrpmax	0.00223%	44,890
South Asian	0.0022%	45,542
Admixed American	0.00167%	60,004
European (non-Finnish)	0.000254%	393,348

Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.

Variant & gene context

Gene: ABCC8
Protein: p.Val607Met
Coding: c.1819G>A
MANE Select: NM_000352
dbSNP: rs377405677
Type: single nucleotide variant
Location: chr11:17428669 (GRCh38)
Gene constraint: LOEUF 0.829 · pLI <0.01 · ClinGen HI gene assoc. with recessive phenotype (gnomAD)
Structure: AlphaFold pLDDT 82.56 · 8 PDB
Residue 607: an α-helix

Full ABCC8 gene report on Sugi Atlas → Gene function, pathways, protein structure, interactions & more

Disease context

Hereditary hyperinsulinism

Also linked: type 2 diabetes mellitus hypoglycemia, leucine-induced hyperinsulinemic hypoglycemia, familial, 1 diabetes mellitus, transient neonatal, 2 maturity-onset diabetes of the young diabetes mellitus, permanent neonatal 3

Similar variants

ABCC8 p.Val607= Likely benign ★ same residue
ABCC8 c.1176+2T>C Pathogenic/Likely pathogenic ★★ same condition
ABCC8 c.1333-1013A>G Pathogenic/Likely pathogenic ★★ same condition
ABCC8 c.148+1G>A Pathogenic/Likely pathogenic ★★ same condition
ABCC8 c.148+2T>G Likely pathogenic ★★ same condition
ABCC8 c.1630+1G>A Pathogenic/Likely pathogenic ★★ same condition
ABCC8 c.1630+1G>T Pathogenic ★★ same condition
ABCC8 c.1817+1G>C Pathogenic ★★ same condition

Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →

Cite Sugi Variant

Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/abcc8-p-val607met (accessed [today's date]).

Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown