Is ACD p.Gln106= (c.318G>A) pathogenic?

ACD p.Gln106= (c.318G>A) is classified Likely benign in ACD (ClinVar, Single submitter, 1 submitter; last evaluated 2022-12-23). Absent from gnomAD v4.1; Associated with Inborn genetic diseases.

What condition is associated with ACD p.Gln106= (c.318G>A)?

ACD p.Gln106= (c.318G>A) is associated with Inborn genetic diseases (ClinVar).

How common is ACD p.Gln106= (c.318G>A) in the general population?

ACD p.Gln106= (c.318G>A) is absent from gnomAD v4.1 (gnomAD).

ACD p.Gln106=

c.318G>A · rs2543608929 · VCV2452445

Likely benign Single submitter

Classification

Likely benign

ClinVar

Review

Single submitter ★☆☆☆

ClinVar · 1 submitter

gnomAD v4.1

Not reported

no allele count reported in gnomAD v4.1 (AN 1,613,500)

Conditions

Inborn genetic diseases

Computational evidence

Protein change
Missense predictors do not apply to this variant type; conservation/SpliceAI carries the signal.
Splicing
SpliceAI	Δ0.32	donor loss at this position · masked 0 · deltas
Constraint at this position
Conservation	phyloP 0.1	GERP 0.38, phastCons 0.94
Overall
CADD	15.65	PHRED · no single calibrated threshold — expert panels disagree

Population frequency

gnomAD v4.1 · exomes + genomes

No allele count reported in gnomAD v4.1 (AN 1,613,500). This is missing data, not an absence: the variant may or may not be present in gnomAD. Rarity (ACMG PM2) and BA1/BS1 cannot be assessed for it.

Variant & gene context

Gene: ACD
Protein: p.Gln106=
Coding: c.318G>A
MANE Select: NM_001082486
dbSNP: rs2543608929
Type: single nucleotide variant
Location: chr16:67659720 (GRCh38)
Gene constraint: LOEUF 0.921 · pLI <0.01 · ClinGen HI 0/3 (gnomAD)
Structure: AlphaFold pLDDT 63.09 · 28 PDB
Residue 106: a β-strand

Full ACD gene report on Sugi Atlas → Gene function, pathways, protein structure, interactions & more

Disease context

Inborn genetic diseases — disease report on Sugi Atlas → Associated genes, phenotypes, clinical trials & treatments

Similar variants

ACD p.Gln106Ter Uncertain significance ★★ same residue
ACD p.Gln106Arg Uncertain significance ★ ⚠ same residue
ACD c.-20C>T Uncertain significance ★★ same condition
ACD c.-26T>G Uncertain significance ★★ same condition
ACD c.-29C>A Uncertain significance ★★ same condition
ACD c.-30C>T Uncertain significance ★★ same condition
ACD c.-35C>T Uncertain significance ★★ same condition
ACD c.-36C>G Uncertain significance ★★ same condition

Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →

Cite Sugi Variant

Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/acd-p-gln106 (accessed [today's date]).

Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown