Is ACD p.Gln359= (c.1077G>A) pathogenic?

ACD p.Gln359= (c.1077G>A) is classified Likely benign in ACD (ClinVar, Single submitter, 1 submitter; last evaluated 2021-03-29). Absent from gnomAD v4.1; Associated with Inborn genetic diseases.

What condition is associated with ACD p.Gln359= (c.1077G>A)?

ACD p.Gln359= (c.1077G>A) is associated with Inborn genetic diseases (ClinVar).

How common is ACD p.Gln359= (c.1077G>A) in the general population?

ACD p.Gln359= (c.1077G>A) is absent from gnomAD v4.1 (gnomAD).

ACD p.Gln359=

c.1077G>A · rs200526158 · VCV1770232

Likely benign Single submitter

Classification

Likely benign

ClinVar

Review

Single submitter ★☆☆☆

ClinVar · 1 submitter

gnomAD v4.1

Absent

absent from gnomAD v4.1

Conditions

Inborn genetic diseases

Computational evidence

Protein change
Missense predictors do not apply to this variant type; conservation carries the signal.
Splicing
SpliceAI	<0.2	all four deltas below 0.2 · C>A here scores Δ0.49 · evaluated, not missing
Constraint at this position
Conservation	phyloP 0.098	GERP -0.76
Overall
CADD	2.604	PHRED · no single calibrated threshold — expert panels disagree

Population frequency

gnomAD v4.1 · exomes + genomes

Absent from gnomAD v4.1. Not observed in any sequenced alleles — a rarity signal (ACMG PM2-supporting), not evidence of pathogenicity on its own.

Variant & gene context

Gene: ACD
Protein: p.Gln359=
Coding: c.1077G>A
MANE Select: NM_001082486
dbSNP: rs200526158
Type: single nucleotide variant
Location: chr16:67658115 (GRCh38)
Gene constraint: LOEUF 0.921 · pLI <0.01 · ClinGen HI 0/3 (gnomAD)
Structure: AlphaFold pLDDT 63.09 · 28 PDB
Residue 359: the 'disordered' region

Full ACD gene report on Sugi Atlas → Gene function, pathways, protein structure, interactions & more

Disease context

Inborn genetic diseases — disease report on Sugi Atlas → Associated genes, phenotypes, clinical trials & treatments

Similar variants

ACD p.Gln359Glu Uncertain significance ★ ⚠ same residue
ACD p.Gln359His Uncertain significance ★★ ⚠ same residue
ACD c.-20C>T Uncertain significance ★★ same condition
ACD c.-26T>G Uncertain significance ★★ same condition
ACD c.-29C>A Uncertain significance ★★ same condition
ACD c.-30C>T Uncertain significance ★★ same condition
ACD c.-35C>T Uncertain significance ★★ same condition
ACD c.-36C>G Uncertain significance ★★ same condition

Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →

Cite Sugi Variant

Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/acd-p-gln359 (accessed [today's date]).

Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown