ACTA2 p.Leu351=
c.1053G>T · rs1589388811 · VCV751094
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Absent
absent from gnomAD v4.1
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP 0.25 | GERP 0.12, phastCons 0.98 |
| Overall | ||
| CADD | 16.53 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Absent from gnomAD v4.1. Not observed in any sequenced alleles — a rarity signal (ACMG PM2-supporting), not evidence of pathogenicity on its own.
Variant & gene context
- Gene
- ACTA2
- Protein
- p.Leu351=
- Coding
- c.1053G>T
- MANE Select
- NM_001613
- dbSNP
- rs1589388811
- Type
- single nucleotide variant
- Location
- chr10:88935304 (GRCh38)
- Gene constraint
- LOEUF 0.472 · pLI 0.99 · ClinGen HI 1/3 (gnomAD)
- Structure
- AlphaFold pLDDT 95.43
Similar variants
- ACTA2 p.Arg118Gln Pathogenic/Likely pathogenic ★★ same type
- ACTA2 p.Arg149Cys Pathogenic ★★ same type
- ACTA2 p.Arg149Leu Pathogenic/Likely pathogenic ★★ same type
- ACTA2 p.Arg179Cys Pathogenic ★★ same type
- ACTA2 p.Arg179His Pathogenic ★★ same type
- ACTA2 p.Arg198Cys Pathogenic/Likely pathogenic ★★ same type
- ACTA2 p.Arg198His Pathogenic/Likely pathogenic ★★ same type
- ACTA2 p.Arg256Cys Likely pathogenic ★★ ⚠ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/acta2-p-leu351 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown