ADAMTSL4 p.Arg173=
c.519G>A · rs2526602459 · VCV2031329
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Absent
absent from gnomAD v4.1
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP 1.9 | GERP -0.6, phastCons 1 |
| Overall | ||
| CADD | 7.781 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Absent from gnomAD v4.1. Not observed in any sequenced alleles — a rarity signal (ACMG PM2-supporting), not evidence of pathogenicity on its own.
Variant & gene context
- Gene
- ADAMTSL4
- Protein
- p.Arg173=
- Coding
- c.519G>A
- MANE Select
- NM_019032
- dbSNP
- rs2526602459
- Type
- single nucleotide variant
- Location
- chr1:150553510 (GRCh38)
- Gene constraint
- LOEUF 0.92 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 65.18
- Residue 173
- the 'disordered' region
Similar variants
- ADAMTSL4 p.Arg173Gly Uncertain significance ★ ⚠ same residue
- ADAMTSL4 c.2178-2A>G Likely pathogenic ★★ same type
- ADAMTSL4 p.Arg1007Ter Pathogenic/Likely pathogenic ★★ same type
- ADAMTSL4 p.Arg126Ter Pathogenic/Likely pathogenic ★★ same type
- ADAMTSL4 p.Arg141Ter Pathogenic ★★ same type
- ADAMTSL4 p.Arg309Ter Pathogenic ★★ same type
- ADAMTSL4 p.Arg670Ter Pathogenic/Likely pathogenic ★★ same type
- ADAMTSL4 p.Arg746His Pathogenic ★★ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/adamtsl4-p-arg173 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown