ADPRS p.Glu337=
c.1011G>A · VCV4966042
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Rare
very rare (popmax 0.0011%, sas)
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP 3.4 | GERP -0.34, phastCons 1 |
| Overall | ||
| CADD | 7.832 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Grpmax group
0.0011%
South Asian · 1/91,096 alleles
Filtering AF
2.8e-05%
ClinGen BA1/BS1 input
FAF95, joint · FAF99 1.1e-05%
Overall
0.000186%
3/1,614,126 alleles · very rare
| Ancestry group | Frequency | 1 in |
|---|---|---|
| South Asiangrpmax | 0.0011% | 91,096 |
| European (non-Finnish) | 0.000169% | 590,033 |
Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.
Variant & gene context
- Gene
- ADPRS
- Protein
- p.Glu337=
- Coding
- c.1011G>A
- MANE Select
- NM_017825
- Type
- single nucleotide variant
- Location
- chr1:36093305 (GRCh38)
- Gene constraint
- LOEUF 1.155 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 95.70 · 14 PDB
- Residue 337
- a UniProt-annotated variant site (in condsias; no detectable protein in patient fibroblasts); an α-helix
Similar variants
- ADPRS p.Glu337Asp Uncertain significance ★ ⚠ same residue
- ADPRS p.Glu337Gln Uncertain significance ★ ⚠ same residue
- ADPRS p.Gln106Ter Pathogenic/Likely pathogenic ★★ same type
- ADPRS p.Ser177Leu Likely pathogenic ★★ same type
- ADPRS p.Thr79Pro Pathogenic/Likely pathogenic ★★ same type
- ADPRS p.Val335Gly Pathogenic/Likely pathogenic ★★ same type
- ADPRS p.Ala94Asp Uncertain significance ★★ ⚠ same type
- ADPRS p.Arg175Trp Uncertain significance ★★ ⚠ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/adprs-p-glu337 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown