Is ANO5 p.Asp815= (c.2445C>T) pathogenic?

ANO5 p.Asp815= (c.2445C>T) is classified Likely benign in ANO5 (ClinVar, Multiple submitters, 3 submitters; last evaluated 2024-12-06). Ultra-rare (popmax 0.0335%, eas); Associated with gnathodiaphyseal dysplasia.

What condition is associated with ANO5 p.Asp815= (c.2445C>T)?

ANO5 p.Asp815= (c.2445C>T) is associated with gnathodiaphyseal dysplasia, autosomal recessive limb-girdle muscular dystrophy type 2L (ClinVar).

How common is ANO5 p.Asp815= (c.2445C>T) in the general population?

ANO5 p.Asp815= (c.2445C>T) is ultra-rare (popmax 0.0335%, eas) (gnomAD).

ANO5 p.Asp815=

c.2445C>T · rs774160498 · VCV772536

Likely benign Multiple submitters

Classification

Likely benign

ClinVar

Review

Multiple submitters ★★☆☆

ClinVar · 3 submitters

gnomAD v4.1

Rare

ultra-rare (popmax 0.0335%, eas)

Conditions

gnathodiaphyseal dysplasia

Computational evidence

Protein change
Missense predictors do not apply to this variant type; conservation carries the signal.
Splicing
SpliceAI	—	not assessed · no allele here is in the release
Constraint at this position
Conservation	phyloP -4.3	GERP -5.4
Overall
CADD	4.067	PHRED · no single calibrated threshold — expert panels disagree

Population frequency

gnomAD v4.1 · exomes + genomes

Grpmax group 0.0335% East Asian · 15/44,724 alleles

Filtering AF 0.0206% ClinGen BA1/BS1 input FAF95, joint · FAF99 0.0167%

Overall 0.00317% 51/1,609,910 alleles · ultra-rare exomes 42/1,458,758 · genomes 9/151,152 · joint denominator

Ancestry group	Frequency	1 in
East Asiangrpmax	0.0335%	2,982
Admixed American	0.00669%	14,945
African / African-American	0.00402%	24,865
South Asian	0.0033%	30,329
Finnishnot grpmax-eligible	0.00313%	31,904
European (non-Finnish)	0.00195%	51,183
Remaining individualsnot grpmax-eligible	0.0016%	62,310

Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.

Variant & gene context

Gene: ANO5
Protein: p.Asp815=
Coding: c.2445C>T
MANE Select: NM_213599
dbSNP: rs774160498
Type: single nucleotide variant
Location: chr11:22276124 (GRCh38)
Gene constraint: LOEUF 1.034 · pLI <0.01 (gnomAD)
Structure: AlphaFold pLDDT 82.22
Residue 815: a UniProt-annotated variant site (in lgmdr12); a UniProt-annotated variant site (in lgmdr12; uncertain significance)

Full ANO5 gene report on Sugi Atlas → Gene function, pathways, protein structure, interactions & more

Disease context

gnathodiaphyseal dysplasia — disease report on Sugi Atlas → Associated genes, phenotypes, clinical trials & treatments

Also linked: autosomal recessive limb-girdle muscular dystrophy type 2L

Similar variants

ANO5 p.Asp815Glu Uncertain significance ★ ⚠ same residue
ANO5 p.Asp815Asn Uncertain significance ★ ⚠ same residue
ANO5 c.1898+1G>A Pathogenic ★★★ same condition
ANO5 c.41-1G>A Pathogenic ★★★ same condition
ANO5 p.Ala432Gly Pathogenic ★★★ ⚠ same condition
ANO5 p.Arg484Cys Likely pathogenic ★★★ same condition
ANO5 p.Arg50Ter Pathogenic ★★★ same condition
ANO5 p.Arg58Trp Pathogenic ★★★ ⚠ same condition

Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →

Cite Sugi Variant

Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/ano5-p-asp815 (accessed [today's date]).

Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown