ARHGAP24 p.Ala711=
c.2133C>T · rs762010260 · VCV3047794
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 2 submitters
gnomAD v4.1
Rare
ultra-rare (popmax 0.0147%, afr)
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP -16 | GERP -14 |
| Overall | ||
| CADD | 0.262 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Grpmax group
0.0147%
African / African-American · 11/74,768 alleles
Filtering AF
0.00817%
ClinGen BA1/BS1 input
FAF95, joint · FAF99 0.00634%
Overall
0.00465%
75/1,613,586 alleles · ultra-rare
| Ancestry group | Frequency | 1 in |
|---|---|---|
| African / African-Americangrpmax | 0.0147% | 6,797 |
| Remaining individualsnot grpmax-eligible | 0.008% | 12,497 |
| European (non-Finnish) | 0.00466% | 21,453 |
| Admixed American | 0.00334% | 29,977 |
| Finnishnot grpmax-eligible | 0.00313% | 31,971 |
Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.
Variant & gene context
- Gene
- ARHGAP24
- Protein
- p.Ala711=
- Coding
- c.2133C>T
- MANE Select
- NM_001025616
- dbSNP
- rs762010260
- Type
- single nucleotide variant
- Location
- chr4:86000608 (GRCh38)
- Gene constraint
- LOEUF 0.797 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 66.68
Similar variants
- ARHGAP24 p.Arg39His Uncertain significance ★★ ⚠ same type
- ARHGAP24 p.Arg483Cys Uncertain significance ★★ ⚠ same type
- ARHGAP24 p.Arg93Ter Uncertain significance ★★ same type
- ARHGAP24 p.Arg95Gln Uncertain significance ★★ ⚠ same type
- ARHGAP24 p.Asn454Ser Uncertain significance ★★ ⚠ same type
- ARHGAP24 p.Asn587Ile Uncertain significance ★★ ⚠ same type
- ARHGAP24 p.Asp55Val Uncertain significance ★★ ⚠ same type
- ARHGAP24 p.Gln158Arg Uncertain significance ★★ ⚠ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/arhgap24-p-ala711 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown