ATRIP p.Gln73=
c.219A>G · rs144998094 · VCV746211
Likely benign
Multiple submitters
Classification
Likely benign
ClinVar
Review
Multiple submitters ★★☆☆
ClinVar · 3 submitters
gnomAD v4.1
Rare
ultra-rare (popmax 0.0418%, amr)
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP -1.1 | GERP -3.6 |
| Overall | ||
| CADD | 3.289 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Grpmax group
0.0418%
Admixed American · 22/52,662 alleles
Filtering AF
0.0282%
ClinGen BA1/BS1 input
FAF95, joint · FAF99 0.0238%
Overall
0.0037%
58/1,566,300 alleles · ultra-rare
exomes 54/1,414,198 · genomes 4/152,102 · joint denominator
| Ancestry group | Frequency | 1 in |
|---|---|---|
| Admixed Americangrpmax | 0.0418% | 2,394 |
| East Asian | 0.0153% | 6,522 |
| Remaining individualsnot grpmax-eligible | 0.00331% | 30,203 |
| South Asian | 0.00232% | 43,133 |
| European (non-Finnish) | 0.00216% | 46,381 |
| African / African-American | 0.00141% | 70,892 |
Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.
Variant & gene context
- Gene
- ATRIP
- Protein
- p.Gln73=
- Coding
- c.219A>G
- MANE Select
- NM_130384
- dbSNP
- rs144998094
- Type
- single nucleotide variant
- Location
- chr3:48447064 (GRCh38)
- Gene constraint
- LOEUF 0.707 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 70.10 · 24 PDB
Similar variants
- ATRIP p.Gln73Ter Uncertain significance ★★ same residue
- ATRIP p.Gln73Glu Uncertain significance ★ ⚠ same residue
- TREX1 p.Pro73= Conflicting classifications of pathogenicity ★ same residue
- TREX1 p.Pro73Leu Conflicting classifications of pathogenicity ★ ⚠ same residue
- TREX1 p.Arg114His Pathogenic/Likely pathogenic ★★ ⚠ same type
- TREX1 p.Arg164Ter Pathogenic/Likely pathogenic ★★ same type
- TREX1 p.Asp18Asn Pathogenic ★★ same type
- TREX1 p.Asp200His Likely pathogenic ★★ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/atrip-p-gln73 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown