CASP8AP2 p.Pro877Ser
c.2629C>T · rs923076235 · VCV3137637
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Absent
absent from gnomAD v4.1
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP 1.1 | GERP -3.1, phastCons 0.83 |
| Regional constraint | o/e 0.76 | unconstrained · MANE · 22 kb · p 7.8e-31 · regional, not allelic |
| Overall | ||
| CADD | 3.141 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Absent from gnomAD v4.1. Not observed in any sequenced alleles — a rarity signal (ACMG PM2-supporting), not evidence of pathogenicity on its own.
Variant & gene context
- Gene
- CASP8AP2
- Protein
- p.Pro877Ser
- Coding
- c.2629C>T
- MANE Select
- NM_001137667
- dbSNP
- rs923076235
- Type
- single nucleotide variant
- Location
- chr6:89864338 (GRCh38)
- Gene constraint
- LOEUF 0.209 · pLI 1.00 (gnomAD)
- Structure
- AlphaFold pLDDT 44.28 · 4 PDB
- Residue 877
- the 'disordered' region
Similar variants
- CASP8AP2 p.Ala1030Ser Uncertain significance ★ same type
- CASP8AP2 p.Ala1518Asp Uncertain significance ★ same type
- CASP8AP2 p.Ala1731Thr Uncertain significance ★ same type
- CASP8AP2 p.Ala1748Asp Uncertain significance ★ same type
- CASP8AP2 p.Ala1779Gly Uncertain significance ★ same type
- CASP8AP2 p.Ala1884Val Uncertain significance ★ same type
- CASP8AP2 p.Ala19Gly Uncertain significance ★ same type
- CASP8AP2 p.Ala453Val Uncertain significance ★ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/casp8ap2-p-pro877ser (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown