CELF2 p.Gln107fs
c.319_326del · VCV3600877
Uncertain significance
Single submitter
Classification
Uncertain significance
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
Consequence
frameshift
predicted LoF
gnomAD v4.1
Rare
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Consequence | frameshift | predicted loss-of-function in a LoF-intolerant gene |
|---|---|---|
| NMD | predicted | premature termination codon in exon 3 of 13 |
| Splicing | ||
| SpliceAI | — | not assessed · substitutions only |
| Constraint at this position | ||
| Conservation | phyloP 7.6 | GERP 2.1, phastCons 1 |
Predicted loss-of-function is descriptive, not an applied PVS1 code.
Variant & gene context
- Gene
- CELF2
- Protein
- p.Gln107fs
- Coding
- c.319_326del
- MANE Select
- NM_001326342
- Type
- Deletion
- Location
- chr10:11217471 (GRCh38)
- Gene constraint
- LOEUF 0.294 · pLI 1.00 (gnomAD)
- Structure
- AlphaFold pLDDT 66.26 · 7 PDB
- Residue 107
- the rrm 1 domain; the 'necessary for rna-binding, tnnt2 exon 5 and nmda r1 exon 21 inclusion' region
Similar variants
- CELF2 c.355-6858_403+3281del Pathogenic ★ same type
- CELF2 p.Ala295fs Pathogenic ★ same type
- CELF2 p.Asp451fs Pathogenic ★ same type
- CELF2 p.Lys466fs Likely pathogenic ★ same type
- CELF2 p.Lys471fs Likely pathogenic ★ same type
- CELF2 p.Met13fs Likely pathogenic ★ same type
- CELF2 c.355-48_403+52del Uncertain significance ★ same type
- CELF2 p.Ala363_Leu364insTer Uncertain significance ★ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/celf2-p-gln107fs (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown