CHD7 p.Phe1985fs
c.5955del · rs2488035644 · VCV2444223
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Consequence | frameshift | predicted loss-of-function in a haploinsufficient gene (ClinGen) |
|---|---|---|
| NMD | predicted | premature termination codon in exon 30 of 38 |
| Splicing | ||
| SpliceAI | — | not assessed · substitutions only |
| Constraint at this position | ||
| Conservation | phyloP 4.2 | GERP -0.29, phastCons 1 |
Predicted loss-of-function is descriptive, not an applied PVS1 code.
Population frequency
No gnomAD frequency available for this variant. This is missing data, not an absence: the variant may or may not be present in gnomAD. Rarity (ACMG PM2) and BA1/BS1 cannot be assessed for it.
Variant & gene context
- Gene
- CHD7
- Protein
- p.Phe1985fs
- Coding
- c.5955del
- MANE Select
- NM_017780
- dbSNP
- rs2488035644
- Type
- Deletion
- Location
- chr8:60852554 (GRCh38)
- Gene constraint
- LOEUF 0.109 · pLI 1.00 · ClinGen HI 3/3 (gnomAD)
Similar variants
- CHD7 c.8078del Likely pathogenic ★★ same condition
- CHD7 p.Arg969fs Pathogenic ★★ same condition
- CHD7 p.Asn96fs Pathogenic ★★ same condition
- CHD7 p.Asp1090fs Pathogenic/Likely pathogenic ★★ same condition
- CHD7 p.Asp2684fs Pathogenic ★★ same condition
- CHD7 p.Gln2426fs Pathogenic ★★ same condition
- CHD7 p.Glu2450fs Pathogenic ★★ same condition
- CHD7 p.His903fs Pathogenic ★★ same condition
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/chd7-p-phe1985fs (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown