DNAJC12 p.Asp2=
c.6T>C · VCV3684058
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Absent
absent from gnomAD v4.1
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP -0.03 | GERP -3.2, phastCons 0.058 |
| Overall | ||
| CADD | 7.651 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Absent from gnomAD v4.1. Not observed in any sequenced alleles — a rarity signal (ACMG PM2-supporting), not evidence of pathogenicity on its own.
Variant & gene context
- Gene
- DNAJC12
- Protein
- p.Asp2=
- Coding
- c.6T>C
- MANE Select
- NM_021800
- Type
- single nucleotide variant
- Location
- chr10:67838006 (GRCh38)
- Gene constraint
- LOEUF 1.193 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 68.84 · 1 PDB
Similar variants
- DNAJC12 p.Arg72Ter Pathogenic/Likely pathogenic ★★ same type
- DNAJC12 p.Gln162Ter Pathogenic/Likely pathogenic ★★ same type
- DNAJC12 p.Trp175Ter Pathogenic ★★ same type
- DNAJC12 p.Ala144Ser Uncertain significance ★★ ⚠ same type
- DNAJC12 p.Ala73Gly Uncertain significance ★★ ⚠ same type
- DNAJC12 p.Ala73Val Uncertain significance ★★ ⚠ same type
- DNAJC12 p.Arg180Cys Uncertain significance ★★ ⚠ same type
- DNAJC12 p.Arg180His Uncertain significance ★★ ⚠ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/dnajc12-p-asp2 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown