Benign
Multiple submitters
Classification
Benign
ClinVar
Review
Multiple submitters ★★☆☆
ClinVar · 3 submitters
gnomAD v4.1
Common
common (popmax 14.2%, sas) — too common for a highly-penetrant pathogenic allele
Conditions
1
tremor, hereditary essential, 1
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP -0.92 | GERP -3.8, phastCons 0.001 |
| Overall | ||
| CADD | 0.835 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Grpmax group
14.2%
South Asian · 12,114/85,482 alleles
Filtering AF
14%
ClinGen BA1/BS1 input
FAF95, joint · FAF99 13.9%
Overall
6.73%
106,289/1,579,198 alleles · common
| Ancestry group | Frequency | 1 in |
|---|---|---|
| South Asiangrpmax | 14.2% | 7 |
| African / African-American | 12.4% | 8 |
| Admixed American | 12% | 8 |
| Finnishnot grpmax-eligible | 10.9% | 9 |
| Middle Eastern | 8.25% | 12 |
| Remaining individualsnot grpmax-eligible | 7% | 14 |
| Ashkenazi Jewishnot grpmax-eligible | 6.39% | 16 |
| European (non-Finnish) | 5.52% | 18 |
| East Asian | 1.82% | 55 |
| Amishnot grpmax-eligible | 1.64% | 61 |
Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.
Variant & gene context
- Gene
- DRD3
- Protein
- p.Ala17=
- Coding
- c.51A>G
- MANE Select
- NM_000796
- dbSNP
- rs3732783
- Type
- single nucleotide variant
- Location
- chr3:114171942 (GRCh38)
- Gene constraint
- LOEUF 0.604 · pLI 0.66 (gnomAD)
- Structure
- AlphaFold pLDDT 75.70 · 9 PDB
Similar variants
- DRD3 c.-105G>A Likely benign ★★ same condition
- DRD3 c.-333G>A Benign ★★ same condition
- DRD3 p.Ala38Thr Likely benign ★★ same condition
- DRD3 p.Gln240= Benign ★★ same condition
- DRD3 p.Gln329= Benign ★★ same condition
- DRD3 p.Gly9Ser Benign/Likely benign ★★ same condition
- DRD3 p.His359= Benign/Likely benign ★★ same condition
- DRD3 p.Pro135His Uncertain significance ★ ⚠ same condition
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/drd3-p-ala17 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown