ABCA5 — 263 ClinVar variants

All ClinVar germline ABCA5 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 209 flagged for review →

2 Pathogenic · 7 Likely pathogenic · 13 Benign · 40 Likely benign · 201 Uncertain significance

Full ABCA5 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 209

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors lean, ClinVar uncertain 132

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 76

The independent predictors disagree with each other — read with care.

All ABCA5 variants

Pathogenic 2

  • p.Arg1502Ter Single submitter gingival fibromatosis-hypertrichosis syndrome
  • p.Pro83fs No assertion criteria hypercholesterolemia, familial, 1

Likely pathogenic 7

  • p.Arg1439Ter Single submitter gingival fibromatosis-hypertrichosis syndrome
  • p.Arg544fs Single submitter gingival fibromatosis-hypertrichosis syndrome
  • p.Glu1424Ter Single submitter gingival fibromatosis-hypertrichosis syndrome
  • p.His326fs Single submitter gingival fibromatosis-hypertrichosis syndrome
  • p.Leu1055fs Single submitter gingival fibromatosis-hypertrichosis syndrome
  • p.Leu723fs Single submitter
  • p.Arg857Cys No assertion criteria gingival fibromatosis-hypertrichosis syndrome ⚠

Benign 13

Likely benign 40

Uncertain significance 201