AFG3L2 — 571 ClinVar variants

All ClinVar germline AFG3L2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 264 flagged for review →

35 Pathogenic · 3 Pathogenic/Likely pathogenic · 29 Likely pathogenic · 31 Conflicting · 51 Benign · 9 Benign/Likely benign · 129 Likely benign · 284 Uncertain significance

Full AFG3L2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 264

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors lean, ClinVar uncertain 155

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 155

Predictors split 90

The independent predictors disagree with each other — read with care.

All AFG3L2 variants

Pathogenic 35

Pathogenic/Likely pathogenic 3

  • p.Met666Thr Multiple submitters spinocerebellar ataxia type 28
  • p.Met666Val Multiple submitters spinocerebellar ataxia type 28
  • p.Tyr689His Multiple submitters spinocerebellar ataxia type 28

Likely pathogenic 29

Conflicting classifications of pathogenicity 31

Benign 51

Benign/Likely benign 9

  • c.1319-7C>T Multiple submitters spinocerebellar ataxia type 28
  • c.1981-14T>C Multiple submitters
  • c.215-5A>C Multiple submitters spinocerebellar ataxia type 28
  • c.-137G>C Multiple submitters spinocerebellar ataxia type 28
  • c.-71C>T Multiple submitters spinocerebellar ataxia type 28
  • c.*109A>C Multiple submitters spinocerebellar ataxia type 28
  • p.Ala411= Multiple submitters
  • p.Pro493= Multiple submitters
  • p.Thr355= Multiple submitters spinocerebellar ataxia type 28

Likely benign 129

Uncertain significance 284