AKAP9 — 3606 ClinVar variants

All ClinVar germline AKAP9 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 1871 flagged for review →

3 Likely pathogenic · 290 Conflicting · 107 Benign · 96 Benign/Likely benign · 1112 Likely benign · 1998 Uncertain significance

Full AKAP9 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 1871

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 235

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification. · showing the 150 best-reviewed of 235

Predictors lean, ClinVar uncertain 1468

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 1468

Predictors split 166

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 166

All AKAP9 variants

Likely pathogenic 3

Conflicting classifications of pathogenicity 290

Benign 107

Benign/Likely benign 96

Likely benign 1112

Showing the top 300 by review status; the full set is in the sitemap.

  • c.10399-4C>T Multiple submitters long QT syndrome
  • c.10607+109T>C Multiple submitters
  • c.11098-106T>C Multiple submitters
  • c.11098-17C>T Multiple submitters long QT syndrome
  • c.11098-49G>A Multiple submitters
  • c.11098-5T>C Multiple submitters long QT syndrome
  • c.11687-4A>G Multiple submitters long QT syndrome
  • c.306+63T>G Multiple submitters
  • c.3533-17A>G Multiple submitters long QT syndrome
  • c.3612+116G>A Multiple submitters
  • c.3838-4A>T Multiple submitters long QT syndrome
  • c.406-4T>A Multiple submitters Cardiovascular phenotype
  • c.4693-10A>T Multiple submitters long QT syndrome
  • c.4693-38T>C Multiple submitters
  • c.4917+14del Multiple submitters long QT syndrome
  • c.576+34C>T Multiple submitters
  • c.6507+27A>C Multiple submitters
  • c.6946-8_6946-5del Multiple submitters long QT syndrome
  • c.8019+43A>G Multiple submitters
  • c.8161-7G>A Multiple submitters long QT syndrome 11
  • c.8646+78T>C Multiple submitters
  • c.930+177G>A Multiple submitters
  • c.9358+163A>G Multiple submitters
  • c.9358+91T>A Multiple submitters
  • p.Ala1115= Multiple submitters Cardiovascular phenotype
  • p.Ala1477= Multiple submitters Cardiovascular phenotype
  • p.Ala1767= Multiple submitters long QT syndrome
  • p.Ala18= Multiple submitters long QT syndrome
  • p.Ala1871= Multiple submitters Cardiovascular phenotype
  • p.Ala2159= Multiple submitters Cardiovascular phenotype
  • p.Ala2374= Multiple submitters long QT syndrome
  • p.Ala2693= Multiple submitters Cardiovascular phenotype
  • p.Ala2860= Multiple submitters long QT syndrome
  • p.Ala3043Thr Multiple submitters long QT syndrome
  • p.Ala3051= Multiple submitters Cardiovascular phenotype
  • p.Ala3223= Multiple submitters Cardiovascular phenotype
  • p.Ala3286= Multiple submitters long QT syndrome
  • p.Ala775= Multiple submitters Cardiovascular phenotype
  • p.Ala853= Multiple submitters Cardiovascular phenotype
  • p.Arg126= Multiple submitters long QT syndrome
  • p.Arg1276= Multiple submitters Cardiovascular phenotype
  • p.Arg1596= Multiple submitters long QT syndrome
  • p.Arg218= Multiple submitters Cardiovascular phenotype
  • p.Arg2928= Multiple submitters Cardiovascular phenotype
  • p.Arg3237= Multiple submitters long QT syndrome
  • p.Arg3435= Multiple submitters Cardiovascular phenotype
  • p.Arg3624= Multiple submitters Cardiovascular phenotype
  • p.Arg466= Multiple submitters Cardiovascular phenotype
  • p.Arg541= Multiple submitters Cardiovascular phenotype
  • p.Arg548= Multiple submitters Cardiovascular phenotype
  • p.Arg802= Multiple submitters long QT syndrome
  • p.Asn1296Asp Multiple submitters Cardiovascular phenotype
  • p.Asn1360= Multiple submitters Cardiovascular phenotype
  • p.Asn2055= Multiple submitters Cardiovascular phenotype
  • p.Asn2223= Multiple submitters Cardiovascular phenotype
  • p.Asn2452= Multiple submitters Cardiovascular phenotype
  • p.Asn3125= Multiple submitters Cardiovascular phenotype
  • p.Asn318= Multiple submitters Cardiovascular phenotype
  • p.Asn3271= Multiple submitters Cardiovascular phenotype
  • p.Asn672= Multiple submitters Cardiovascular phenotype
  • p.Asn777= Multiple submitters Cardiovascular phenotype
  • p.Asn840= Multiple submitters Cardiovascular phenotype
  • p.Asp113= Multiple submitters Cardiovascular phenotype
  • p.Asp1792= Multiple submitters Cardiovascular phenotype
  • p.Asp1802Asn Multiple submitters Cardiovascular phenotype
  • p.Asp204Asn Multiple submitters Cardiovascular phenotype ⚠
  • p.Asp2389= Multiple submitters Cardiovascular phenotype
  • p.Asp2524= Multiple submitters long QT syndrome
  • p.Asp2600= Multiple submitters Cardiovascular phenotype
  • p.Asp3683= Multiple submitters long QT syndrome
  • p.Asp686= Multiple submitters long QT syndrome
  • p.Asp918= Multiple submitters Cardiovascular phenotype
  • p.Cys1144Arg Multiple submitters Cardiovascular phenotype
  • p.Cys3732= Multiple submitters long QT syndrome
  • p.Cys3864= Multiple submitters Cardiovascular phenotype
  • p.Cys870= Multiple submitters Cardiovascular phenotype
  • p.Gln1243= Multiple submitters long QT syndrome
  • p.Gln1339= Multiple submitters Cardiovascular phenotype
  • p.Gln1352= Multiple submitters Cardiovascular phenotype
  • p.Gln1586= Multiple submitters Cardiovascular phenotype
  • p.Gln1627= Multiple submitters Cardiovascular phenotype
  • p.Gln1636= Multiple submitters Cardiovascular phenotype
  • p.Gln1887= Multiple submitters Cardiovascular phenotype
  • p.Gln1967= Multiple submitters Cardiovascular phenotype
  • p.Gln1970= Multiple submitters Cardiovascular phenotype
  • p.Gln2009= Multiple submitters Cardiovascular phenotype
  • p.Gln215= Multiple submitters Cardiovascular phenotype
  • p.Gln2227= Multiple submitters long QT syndrome
  • p.Gln2305= Multiple submitters long QT syndrome
  • p.Gln241= Multiple submitters long QT syndrome
  • p.Gln2526= Multiple submitters Cardiovascular phenotype
  • p.Gln2735= Multiple submitters long QT syndrome
  • p.Gln2796= Multiple submitters Cardiovascular phenotype
  • p.Gln2896= Multiple submitters long QT syndrome
  • p.Gln3424= Multiple submitters Cardiovascular phenotype
  • p.Gln3894= Multiple submitters long QT syndrome
  • p.Gln405= Multiple submitters Cardiovascular phenotype
  • p.Gln447= Multiple submitters long QT syndrome
  • p.Gln529= Multiple submitters Cardiovascular phenotype
  • p.Gln545= Multiple submitters long QT syndrome
  • p.Gln59= Multiple submitters Cardiovascular phenotype
  • p.Gln61= Multiple submitters Cardiovascular phenotype
  • p.Gln767= Multiple submitters Cardiovascular phenotype
  • p.Glu1064= Multiple submitters Cardiovascular phenotype
  • p.Glu1149= Multiple submitters long QT syndrome
  • p.Glu1221= Multiple submitters long QT syndrome
  • p.Glu1338= Multiple submitters Cardiovascular phenotype
  • p.Glu1460= Multiple submitters Cardiovascular phenotype
  • p.Glu147= Multiple submitters long QT syndrome
  • p.Glu1584= Multiple submitters long QT syndrome
  • p.Glu1588= Multiple submitters long QT syndrome
  • p.Glu1593= Multiple submitters long QT syndrome
  • p.Glu1600= Multiple submitters Cardiovascular phenotype
  • p.Glu161= Multiple submitters Cardiovascular phenotype
  • p.Glu1624= Multiple submitters long QT syndrome
  • p.Glu1786= Multiple submitters long QT syndrome
  • p.Glu1855= Multiple submitters long QT syndrome
  • p.Glu2043= Multiple submitters long QT syndrome
  • p.Glu2047= Multiple submitters Cardiovascular phenotype
  • p.Glu2059= Multiple submitters Cardiovascular phenotype
  • p.Glu2079= Multiple submitters Cardiovascular phenotype
  • p.Glu223= Multiple submitters Cardiovascular phenotype
  • p.Glu2267= Multiple submitters long QT syndrome
  • p.Glu2332= Multiple submitters Cardiovascular phenotype
  • p.Glu2350= Multiple submitters long QT syndrome
  • p.Glu2505= Multiple submitters long QT syndrome
  • p.Glu2596= Multiple submitters long QT syndrome
  • p.Glu2684= Multiple submitters long QT syndrome
  • p.Glu2866= Multiple submitters Cardiovascular phenotype
  • p.Glu2926= Multiple submitters Cardiovascular phenotype
  • p.Glu303= Multiple submitters Cardiovascular phenotype
  • p.Glu3036= Multiple submitters long QT syndrome
  • p.Glu3176= Multiple submitters Cardiovascular phenotype
  • p.Glu3400= Multiple submitters Cardiovascular phenotype
  • p.Glu3407= Multiple submitters Cardiovascular phenotype
  • p.Glu3679= Multiple submitters Cardiovascular phenotype
  • p.Glu423= Multiple submitters long QT syndrome
  • p.Glu4Gln Multiple submitters Cardiovascular phenotype
  • p.Glu515= Multiple submitters long QT syndrome
  • p.Glu553= Multiple submitters Cardiovascular phenotype
  • p.Glu586= Multiple submitters Cardiovascular phenotype
  • p.Glu776= Multiple submitters Cardiovascular phenotype
  • p.Glu783= Multiple submitters Cardiovascular phenotype
  • p.Glu96Asp Multiple submitters Cardiovascular phenotype
  • p.Gly1033= Multiple submitters Cardiovascular phenotype
  • p.Gly13= Multiple submitters long QT syndrome
  • p.Gly1467= Multiple submitters Cardiovascular phenotype
  • p.Gly1922= Multiple submitters long QT syndrome
  • p.Gly3024= Multiple submitters Cardiovascular phenotype
  • p.Gly3745= Multiple submitters Cardiovascular phenotype
  • p.Gly3745Val Multiple submitters Cardiovascular phenotype
  • p.Gly3819= Multiple submitters Cardiovascular phenotype
  • p.Gly931= Multiple submitters long QT syndrome
  • p.His1366= Multiple submitters long QT syndrome
  • p.His3323= Multiple submitters Cardiovascular phenotype
  • p.His3828Gln Multiple submitters long QT syndrome
  • p.His53Arg Multiple submitters Cardiovascular phenotype
  • p.His633= Multiple submitters long QT syndrome
  • p.Ile324Thr Multiple submitters long QT syndrome
  • p.Ile3558Val Multiple submitters Cardiovascular phenotype
  • p.Ile551Val Multiple submitters long QT syndrome
  • p.Leu1210= Multiple submitters long QT syndrome
  • p.Leu1354= Multiple submitters Cardiovascular phenotype
  • p.Leu1582= Multiple submitters Cardiovascular phenotype
  • p.Leu1657= Multiple submitters long QT syndrome
  • p.Leu1668= Multiple submitters Cardiovascular phenotype
  • p.Leu1757= Multiple submitters Cardiovascular phenotype
  • p.Leu1821= Multiple submitters long QT syndrome
  • p.Leu1844= Multiple submitters long QT syndrome
  • p.Leu1976= Multiple submitters Cardiovascular phenotype
  • p.Leu1995= Multiple submitters long QT syndrome
  • p.Leu2006= Multiple submitters Cardiovascular phenotype
  • p.Leu2058= Multiple submitters Cardiovascular phenotype
  • p.Leu2130= Multiple submitters Cardiovascular phenotype
  • p.Leu229= Multiple submitters Cardiovascular phenotype
  • p.Leu2377= Multiple submitters long QT syndrome
  • p.Leu2543= Multiple submitters long QT syndrome
  • p.Leu2798= Multiple submitters Cardiovascular phenotype
  • p.Leu2834= Multiple submitters Cardiovascular phenotype
  • p.Leu2871= Multiple submitters Cardiovascular phenotype
  • p.Leu3061= Multiple submitters Cardiovascular phenotype
  • p.Leu3173= Multiple submitters Cardiovascular phenotype
  • p.Leu3179= Multiple submitters long QT syndrome
  • p.Leu3189= Multiple submitters Cardiovascular phenotype
  • p.Leu3245= Multiple submitters long QT syndrome
  • p.Leu3352= Multiple submitters Cardiovascular phenotype
  • p.Leu3460= Multiple submitters long QT syndrome
  • p.Leu348= Multiple submitters long QT syndrome
  • p.Leu3638= Multiple submitters Cardiovascular phenotype
  • p.Leu3660= Multiple submitters Cardiovascular phenotype
  • p.Leu3752= Multiple submitters Cardiovascular phenotype
  • p.Leu378= Multiple submitters long QT syndrome
  • p.Leu622= Multiple submitters Cardiovascular phenotype
  • p.Leu630= Multiple submitters Cardiovascular phenotype
  • p.Leu695= Multiple submitters Cardiovascular phenotype
  • p.Leu803= Multiple submitters long QT syndrome
  • p.Leu825= Multiple submitters long QT syndrome
  • p.Leu87= Multiple submitters long QT syndrome
  • p.Leu941= Multiple submitters Cardiovascular phenotype
  • p.Leu992= Multiple submitters long QT syndrome
  • p.Lys1856= Multiple submitters Cardiovascular phenotype
  • p.Lys2342= Multiple submitters long QT syndrome
  • p.Lys2358= Multiple submitters Cardiovascular phenotype
  • p.Lys2660= Multiple submitters long QT syndrome
  • p.Lys2830= Multiple submitters long QT syndrome
  • p.Lys291= Multiple submitters long QT syndrome
  • p.Lys3187= Multiple submitters Cardiovascular phenotype
  • p.Lys3445= Multiple submitters Cardiovascular phenotype
  • p.Lys3719= Multiple submitters long QT syndrome
  • p.Lys410= Multiple submitters Cardiovascular phenotype
  • p.Lys607= Multiple submitters Cardiovascular phenotype
  • p.Lys785= Multiple submitters long QT syndrome
  • p.Lys8= Multiple submitters Cardiovascular phenotype
  • p.Lys875= Multiple submitters long QT syndrome
  • p.Lys882= Multiple submitters Cardiovascular phenotype
  • p.Phe1420Cys Multiple submitters Cardiovascular phenotype
  • p.Phe3780= Multiple submitters Cardiovascular phenotype
  • p.Pro1381= Multiple submitters Cardiovascular phenotype
  • p.Pro1989= Multiple submitters Cardiovascular phenotype
  • p.Pro2964= Multiple submitters long QT syndrome
  • p.Ser1036= Multiple submitters Cardiovascular phenotype
  • p.Ser1309= Multiple submitters Cardiovascular phenotype
  • p.Ser1376Thr Multiple submitters Cardiovascular phenotype
  • p.Ser1465= Multiple submitters Cardiovascular phenotype
  • p.Ser2240= Multiple submitters Cardiovascular phenotype
  • p.Ser2918= Multiple submitters long QT syndrome
  • p.Ser2992Leu Multiple submitters Cardiovascular phenotype
  • p.Ser3092= Multiple submitters Cardiovascular phenotype
  • p.Ser3289= Multiple submitters Cardiovascular phenotype
  • p.Ser3767= Multiple submitters Cardiovascular phenotype
  • p.Ser3772= Multiple submitters Cardiovascular phenotype
  • p.Ser383= Multiple submitters long QT syndrome
  • p.Ser3842= Multiple submitters Cardiovascular phenotype
  • p.Ser581= Multiple submitters Cardiovascular phenotype
  • p.Ser617= Multiple submitters long QT syndrome
  • p.Ser891= Multiple submitters Cardiovascular phenotype
  • p.Thr1215= Multiple submitters long QT syndrome
  • p.Thr1312= Multiple submitters long QT syndrome
  • p.Thr1558= Multiple submitters Cardiovascular phenotype
  • p.Thr1605= Multiple submitters long QT syndrome
  • p.Thr1683= Multiple submitters long QT syndrome
  • p.Thr1741= Multiple submitters Cardiovascular phenotype
  • p.Thr2302= Multiple submitters long QT syndrome
  • p.Thr232= Multiple submitters Cardiovascular phenotype
  • p.Thr2404= Multiple submitters Cardiovascular phenotype
  • p.Thr2427= Multiple submitters Cardiovascular phenotype
  • p.Thr2785= Multiple submitters long QT syndrome
  • p.Thr2870= Multiple submitters Cardiovascular phenotype
  • p.Thr295Ala Multiple submitters Cardiovascular phenotype
  • p.Thr3047= Multiple submitters long QT syndrome
  • p.Thr3148= Multiple submitters long QT syndrome
  • p.Thr3393= Multiple submitters Cardiovascular phenotype
  • p.Thr3469= Multiple submitters long QT syndrome
  • p.Thr3469Met Multiple submitters Cardiovascular phenotype
  • p.Thr3490= Multiple submitters long QT syndrome
  • p.Thr3506= Multiple submitters Cardiovascular phenotype
  • p.Thr3750= Multiple submitters long QT syndrome
  • p.Thr3789= Multiple submitters Cardiovascular phenotype
  • p.Thr3830= Multiple submitters long QT syndrome
  • p.Thr42= Multiple submitters long QT syndrome
  • p.Thr426= Multiple submitters Cardiovascular phenotype
  • p.Thr482= Multiple submitters long QT syndrome
  • p.Thr718= Multiple submitters Cardiovascular phenotype
  • p.Tyr308= Multiple submitters Cardiovascular phenotype
  • p.Tyr3369= Multiple submitters Cardiovascular phenotype
  • p.Tyr3495= Multiple submitters long QT syndrome
  • p.Tyr3870= Multiple submitters Cardiovascular phenotype
  • p.Tyr66= Multiple submitters Cardiovascular phenotype
  • p.Tyr861His Multiple submitters Cardiovascular phenotype ⚠
  • p.Tyr868= Multiple submitters Cardiovascular phenotype
  • p.Val1739= Multiple submitters Cardiovascular phenotype
  • p.Val1826= Multiple submitters Cardiovascular phenotype
  • p.Val2468= Multiple submitters long QT syndrome
  • p.Val2671= Multiple submitters Cardiovascular phenotype
  • p.Val2799= Multiple submitters Cardiovascular phenotype
  • p.Val307= Multiple submitters Cardiovascular phenotype
  • p.Val367Met Multiple submitters Cardiovascular phenotype
  • p.Val3788= Multiple submitters Cardiovascular phenotype
  • p.Val3792= Multiple submitters long QT syndrome
  • p.Val910Leu Multiple submitters Cardiovascular phenotype
  • p.Val924= Multiple submitters Cardiovascular phenotype
  • c.10398+12G>T Single submitter long QT syndrome
  • c.10607+10_10607+11del Single submitter long QT syndrome
  • c.10607+13T>C Single submitter long QT syndrome
  • c.10607+18G>C Single submitter long QT syndrome
  • c.10607+18G>T Single submitter long QT syndrome
  • c.10607+20T>A Single submitter long QT syndrome
  • c.10713+10T>G Single submitter long QT syndrome
  • c.10713+15_10713+16del Single submitter long QT syndrome
  • c.10713+18T>C Single submitter long QT syndrome
  • c.10713+20del Single submitter long QT syndrome
  • c.10714-19C>A Single submitter long QT syndrome
  • c.10714-19C>T Single submitter long QT syndrome
  • c.10896+20C>T Single submitter long QT syndrome
  • c.10897-10G>C Single submitter long QT syndrome
  • c.10897-10G>T Single submitter long QT syndrome
  • c.10897-12T>C Single submitter long QT syndrome
  • c.11097+10A>G Single submitter long QT syndrome
  • c.11097+12C>T Single submitter long QT syndrome
  • c.11097+17A>G Single submitter long QT syndrome

Uncertain significance 1998

Showing the top 300 by review status; the full set is in the sitemap.