ALG11 — 204 ClinVar variants

All ClinVar germline ALG11 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 112 flagged for review →

7 Pathogenic · 2 Pathogenic/Likely pathogenic · 8 Likely pathogenic · 8 Conflicting · 9 Benign · 4 Benign/Likely benign · 44 Likely benign · 122 Uncertain significance

Full ALG11 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 112

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 92

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

All ALG11 variants

Pathogenic 7

  • p.Asn375fs Single submitter
  • p.Cys9Ter Single submitter ALG11-congenital disorder of glycosylation
  • p.Lys296fs Single submitter ALG11-congenital disorder of glycosylation
  • p.Val139Gly Single submitter Seizure
  • p.Gln318Pro No assertion criteria ALG11-congenital disorder of glycosylation
  • p.Leu381Ser No assertion criteria ALG11-congenital disorder of glycosylation
  • p.Leu86Ser No assertion criteria ALG11-congenital disorder of glycosylation

Pathogenic/Likely pathogenic 2

  • p.Ser208fs No assertion criteria ALG11-related disorder
  • p.Tyr279Ser No assertion criteria ALG11-related disorder

Likely pathogenic 8

  • c.45-2A>T Multiple submitters ALG11-congenital disorder of glycosylation
  • p.Arg468Cys Multiple submitters ALG11-congenital disorder of glycosylation ⚠
  • p.Arg468His Multiple submitters ALG11-congenital disorder of glycosylation
  • p.Met1Val Multiple submitters ALG11-related disorder
  • p.Met395Thr Multiple submitters ALG11-congenital disorder of glycosylation
  • p.Glu5Ter Single submitter ALG11-congenital disorder of glycosylation
  • p.Met408Arg Single submitter ALG11-congenital disorder of glycosylation
  • p.Gly436Val No assertion criteria ALG11-congenital disorder of glycosylation

Conflicting classifications of pathogenicity 8

  • c.1208-6T>C Single submitter ALG11-congenital disorder of glycosylation
  • p.Ala179Thr Single submitter ALG11-congenital disorder of glycosylation
  • p.Glu312Gly Single submitter ALG11-congenital disorder of glycosylation ⚠
  • p.Gly216Arg Single submitter ⚠
  • p.Gly343= Single submitter ALG11-congenital disorder of glycosylation
  • p.Ile414Asn Single submitter ALG11-congenital disorder of glycosylation ⚠
  • p.Lys329del Single submitter ALG11-congenital disorder of glycosylation
  • p.Lys423= Single submitter ALG11-congenital disorder of glycosylation

Benign 9

  • c.1207+62A>G Multiple submitters
  • c.276-254A>G Multiple submitters
  • c.*1170G>A Multiple submitters ⚠
  • c.*193A>C Multiple submitters ALG11-congenital disorder of glycosylation
  • c.*468G>T Multiple submitters ALG11-congenital disorder of glycosylation
  • c.*515A>G Multiple submitters ALG11-congenital disorder of glycosylation
  • p.Asn108Ser Multiple submitters ALG11-congenital disorder of glycosylation
  • p.Pro311= Multiple submitters ALG11-congenital disorder of glycosylation
  • c.276-194dup Single submitter

Benign/Likely benign 4

  • c.44+20G>T Multiple submitters ALG11-congenital disorder of glycosylation
  • p.Asn58Ile Multiple submitters ALG11-congenital disorder of glycosylation
  • p.Gly344= Multiple submitters ALG11-congenital disorder of glycosylation
  • p.Tyr369= Multiple submitters ALG11-congenital disorder of glycosylation

Likely benign 44

  • c.44+324T>C Multiple submitters ALG11-congenital disorder of glycosylation
  • c.*173G>A Multiple submitters ALG11-congenital disorder of glycosylation
  • p.Leu484= Multiple submitters ALG11-congenital disorder of glycosylation
  • p.Thr181= Multiple submitters ALG11-congenital disorder of glycosylation
  • c.1208-14G>T Single submitter ALG11-congenital disorder of glycosylation
  • c.1208-213dup Single submitter
  • c.1208-225T>A Single submitter
  • c.1208-7T>C Single submitter ALG11-congenital disorder of glycosylation
  • c.44+10C>G Single submitter
  • c.44+19G>A Single submitter ALG11-congenital disorder of glycosylation
  • c.45-121G>A Single submitter
  • c.45-331G>C Single submitter
  • p.Ala450Val Single submitter ALG11-congenital disorder of glycosylation
  • p.Arg134= Single submitter ALG11-congenital disorder of glycosylation
  • p.Arg358= Single submitter
  • p.Arg6= Single submitter ALG11-congenital disorder of glycosylation
  • p.Asn226= Single submitter ALG11-congenital disorder of glycosylation
  • p.Asn397= Single submitter ALG11-congenital disorder of glycosylation
  • p.Cys9Tyr Single submitter Inborn genetic diseases
  • p.Glu431= Single submitter
  • p.Gly103= Single submitter ALG11-congenital disorder of glycosylation
  • p.Gly245= Single submitter
  • p.Gly272= Single submitter ALG11-congenital disorder of glycosylation
  • p.Ile290= Single submitter
  • p.Leu149= Single submitter ALG11-congenital disorder of glycosylation
  • p.Leu266= Single submitter ALG11-congenital disorder of glycosylation
  • p.Leu268= Single submitter
  • p.Leu292= Single submitter ALG11-congenital disorder of glycosylation
  • p.Leu52Ser Single submitter Inborn genetic diseases
  • p.Lys329= Single submitter ALG11-congenital disorder of glycosylation
  • p.Met455Leu Single submitter Inborn genetic diseases
  • p.Ser258= Single submitter
  • p.Ser336= Single submitter
  • p.Ser419= Single submitter
  • p.Thr102= Single submitter ALG11-congenital disorder of glycosylation
  • p.Thr204= Single submitter ALG11-congenital disorder of glycosylation
  • p.Thr448= Single submitter
  • p.Tyr144= Single submitter ALG11-congenital disorder of glycosylation
  • p.Tyr178= Single submitter ALG11-congenital disorder of glycosylation
  • p.Val232= Single submitter
  • p.Val284= Single submitter
  • p.Val427= Single submitter ALG11-congenital disorder of glycosylation
  • c.-9C>T No assertion criteria ALG11-related disorder
  • p.Cys9= No assertion criteria ALG11-related disorder

Uncertain significance 122