AP1S1 — 141 ClinVar variants
All ClinVar germline AP1S1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 19 flagged for review →
2 Pathogenic · 4 Pathogenic/Likely pathogenic · 1 Likely pathogenic · 2 Conflicting · 18 Benign · 95 Likely benign · 19 Uncertain significance
Full AP1S1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 19
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors lean, ClinVar uncertain 8
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
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AP1S1 p.Arg10Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
AP1S1 p.Glu100Lys
Uncertain significance
Single submitter
MEDNIK syndrome
-
AP1S1 p.Glu51Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- AP1S1 p.Gly120Arg Uncertain significance Single submitter
- AP1S1 p.Leu101Pro Uncertain significance Single submitter
- AP1S1 p.Met119Ile Uncertain significance Single submitter
- AP1S1 p.Val123Asp Uncertain significance Single submitter
- AP1S1 p.Val98Met Uncertain significance Single submitter
Predictors split 11
The independent predictors disagree with each other — read with care.
-
AP1S1 p.Arg28Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
AP1S1 p.Arg3Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
AP1S1 p.Asp122Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
AP1S1 p.Asp122Asn
Uncertain significance
Single submitter
Inborn genetic diseases
- AP1S1 p.Asp122His Uncertain significance Single submitter
-
AP1S1 p.Asp54Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
AP1S1 p.Gly120Ala
Conflicting
Single submitter
Inborn genetic diseases
-
AP1S1 p.Ile71Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
AP1S1 p.Leu140Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
AP1S1 p.Met36Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
AP1S1 p.Ser147Leu
Uncertain significance
Single submitter
Inborn genetic diseases
All AP1S1 variants
Pathogenic 2
- c.183-2A>G Multiple submitters MEDNIK syndrome
- p.Tyr20Ter Single submitter
Pathogenic/Likely pathogenic 4
- c.183-1G>C Multiple submitters MEDNIK syndrome
- c.291+2T>A Multiple submitters MEDNIK syndrome
- p.Gln74Ter Multiple submitters MEDNIK syndrome
- p.Tyr62Ter Multiple submitters MEDNIK syndrome
Likely pathogenic 1
- p.Asp122fs Multiple submitters MEDNIK syndrome
Conflicting classifications of pathogenicity 2
- c.183-5C>T Single submitter Inborn genetic diseases
- p.Gly120Ala Single submitter Inborn genetic diseases ⚠
Benign 18
- c.182+252C>T Multiple submitters
- c.182+78T>C Multiple submitters MEDNIK syndrome
- c.183-23G>A Multiple submitters
- c.292-200T>C Multiple submitters
- c.292-24C>T Multiple submitters
- c.429+309A>G Multiple submitters
- c.430-111C>T Multiple submitters
- c.430-186C>T Multiple submitters
- c.430-71A>G Multiple submitters
- c.430-90C>T Multiple submitters
- c.*293C>T Multiple submitters
- p.Arg33= Multiple submitters
- c.4-11A>G Single submitter
- c.4-302A>G Single submitter
- c.430-310C>A Single submitter
- p.Glu51= Single submitter
- p.Phe49= Single submitter
- p.Phe67= Single submitter
Likely benign 95
- c.183-17T>C Multiple submitters
- p.Gly121= Multiple submitters
- p.Leu6= Multiple submitters Inborn genetic diseases
- c.182+10C>T Single submitter
- c.182+13C>T Single submitter
- c.182+14T>C Single submitter
- c.182+7C>G Single submitter
- c.182+8C>G Single submitter
- c.183-10C>T Single submitter
- c.183-11C>G Single submitter
- c.183-11C>T Single submitter
- c.183-14G>A Single submitter
- c.183-14G>C Single submitter
- c.183-15C>G Single submitter
- c.183-15C>T Single submitter
- c.183-18A>G Single submitter
- c.183-4G>A Single submitter
- c.183-7T>G Single submitter
- c.291+12C>T Single submitter
- c.291+17C>T Single submitter
- c.291+20C>T Single submitter
- c.291+9C>A Single submitter
- c.291+9C>T Single submitter
- c.292-10G>A Single submitter
- c.292-10G>C Single submitter
- c.292-11C>T Single submitter
- c.292-14C>T Single submitter
- c.292-4C>A Single submitter
- c.292-6T>C Single submitter
- c.292-7C>T Single submitter
- c.3+11C>A Single submitter
- c.3+12G>A Single submitter
- c.3+15G>T Single submitter
- c.3+19G>A Single submitter
- c.3+25_3+40dup Single submitter
- c.3+57G>A Single submitter
- c.3+7T>A Single submitter
- c.3+8G>A Single submitter
- c.3+8G>T Single submitter
- c.4-4A>G Single submitter
- c.4-5C>A Single submitter
- c.4-9C>T Single submitter
- c.429+12G>A Single submitter
- c.429+12G>C Single submitter
- c.429+12G>T Single submitter
- c.429+13del Single submitter
- c.429+19GAG[3] Single submitter
- c.429+8C>A Single submitter
- c.429+8C>G Single submitter
- c.430-12T>C Single submitter
- c.430-13_430-10del Single submitter
- c.430-19_430-18del Single submitter
- c.430-19C>T Single submitter
- c.430-6C>T Single submitter
- c.430-8T>C Single submitter
- c.430-9C>T Single submitter
- p.Ala134= Single submitter
- p.Ala138= Single submitter
- p.Arg149= Single submitter
- p.Arg15= Single submitter
- p.Arg42= Single submitter
- p.Asn106= Single submitter
- p.Asp102= Single submitter
- p.Cys69= Single submitter
- p.Cys99= Single submitter
- p.Gln142= Single submitter
- p.Glu153= Single submitter
- p.Glu154= Single submitter
- p.Glu77= Single submitter
- p.His85= Single submitter
- p.Ile103= Single submitter
- p.Ile113= Single submitter
- p.Ile135= Single submitter
- p.Ile79= Single submitter
- p.Leu132= Single submitter
- p.Leu14= Single submitter
- p.Leu152= Single submitter
- p.Leu50= Single submitter
- p.Leu78= Single submitter
- p.Leu90= Single submitter
- p.Lys128= Single submitter
- p.Lys29= Single submitter
- p.Lys45= Single submitter
- p.Lys93= Single submitter
- p.Phe107= Single submitter
- p.Pro44= Single submitter
- p.Ser147= Single submitter
- p.Ser24= Single submitter
- p.Thr23= Single submitter
- p.Thr80= Single submitter
- p.Tyr62= Single submitter
- p.Tyr87= Single submitter
- p.Val32= Single submitter
- p.Val39= Single submitter
- p.Val98= Single submitter
Uncertain significance 19
- p.Arg10Trp Single submitter Inborn genetic diseases ⚠
- p.Arg28Gln Single submitter Inborn genetic diseases ⚠
- p.Arg3Trp Single submitter Inborn genetic diseases ⚠
- p.Asp122Ala Single submitter Inborn genetic diseases ⚠
- p.Asp122Asn Single submitter Inborn genetic diseases ⚠
- p.Asp122His Single submitter ⚠
- p.Asp54Gly Single submitter Inborn genetic diseases ⚠
- p.Glu100Lys Single submitter MEDNIK syndrome ⚠
- p.Glu51Lys Single submitter Inborn genetic diseases ⚠
- p.Gly120Arg Single submitter ⚠
- p.Ile71Met Single submitter Inborn genetic diseases ⚠
- p.Leu101Pro Single submitter ⚠
- p.Leu140Val Single submitter Inborn genetic diseases ⚠
- p.Met119Ile Single submitter ⚠
- p.Met1Thr Single submitter
- p.Met36Thr Single submitter Inborn genetic diseases ⚠
- p.Ser147Leu Single submitter Inborn genetic diseases ⚠
- p.Val123Asp Single submitter ⚠
- p.Val98Met Single submitter ⚠