APOA5 — 331 ClinVar variants

All ClinVar germline APOA5 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 178 flagged for review →

6 Pathogenic · 1 Pathogenic/Likely pathogenic · 8 Likely pathogenic · 17 Conflicting · 13 Benign · 8 Benign/Likely benign · 90 Likely benign · 188 Uncertain significance

Full APOA5 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 178

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 100

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 74

The independent predictors disagree with each other — read with care.

All APOA5 variants

Pathogenic 6

Pathogenic/Likely pathogenic 1

  • p.Asp332fs Multiple submitters Cardiovascular phenotype

Likely pathogenic 8

Conflicting classifications of pathogenicity 17

Benign 13

Benign/Likely benign 8

  • c.162-8T>G Multiple submitters
  • p.Ala114= Multiple submitters Cardiovascular phenotype
  • p.Ala325= Multiple submitters Cardiovascular phenotype
  • p.Arg24= Multiple submitters Cardiovascular phenotype
  • p.Asp37Glu Multiple submitters Cardiovascular phenotype
  • p.His321Leu Multiple submitters Cardiovascular phenotype
  • p.Ser19Trp Multiple submitters hypertriglyceridemia 1 ⚠
  • p.Thr55= Multiple submitters Cardiovascular phenotype

Likely benign 90

  • c.161+14G>C Multiple submitters
  • p.Ala222= Multiple submitters Cardiovascular phenotype
  • p.Ala315= Multiple submitters Cardiovascular phenotype
  • p.Arg143= Multiple submitters Cardiovascular phenotype
  • p.Arg51= Multiple submitters Cardiovascular phenotype
  • p.Arg93= Multiple submitters Cardiovascular phenotype
  • p.Glu208= Multiple submitters Cardiovascular phenotype
  • p.His192= Multiple submitters Cardiovascular phenotype
  • p.His216= Multiple submitters Cardiovascular phenotype
  • p.Ile202= Multiple submitters Cardiovascular phenotype
  • p.Leu314= Multiple submitters Cardiovascular phenotype
  • p.Leu56= Multiple submitters Cardiovascular phenotype
  • p.Phe70= Multiple submitters Cardiovascular phenotype
  • p.Pro318= Multiple submitters Cardiovascular phenotype
  • p.Ser212= Multiple submitters Cardiovascular phenotype
  • p.Ser232= Multiple submitters Cardiovascular phenotype
  • p.Ser278= Multiple submitters Cardiovascular phenotype
  • p.Ser80= Multiple submitters Cardiovascular phenotype
  • p.Val199= Multiple submitters Cardiovascular phenotype
  • p.Val206= Multiple submitters Cardiovascular phenotype
  • c.161+19G>A Single submitter
  • c.162-13del Single submitter
  • c.49+10C>T Single submitter
  • c.49+13C>A Single submitter
  • c.49+8T>C Single submitter
  • c.50-28G>A Single submitter
  • c.50-9dup Single submitter
  • c.*172C>T Single submitter
  • p.Ala13= Single submitter Cardiovascular phenotype
  • p.Ala160= Single submitter Cardiovascular phenotype
  • p.Ala169= Single submitter
  • p.Ala195= Single submitter Cardiovascular phenotype
  • p.Ala214= Single submitter Cardiovascular phenotype
  • p.Ala219= Single submitter Cardiovascular phenotype
  • p.Ala241= Single submitter Cardiovascular phenotype
  • p.Ala297= Single submitter
  • p.Ala298= Single submitter
  • p.Ala82= Single submitter Cardiovascular phenotype
  • p.Arg152= Single submitter Cardiovascular phenotype
  • p.Arg204His Single submitter Cardiovascular phenotype
  • p.Arg75= Single submitter
  • p.Arg94Gln Single submitter Cardiovascular phenotype
  • p.Asn65= Single submitter Cardiovascular phenotype
  • p.Asp157= Single submitter
  • p.Asp345= Single submitter Cardiovascular phenotype
  • p.Asp350= Single submitter
  • p.Asp365= Single submitter
  • p.Gln286= Single submitter Cardiovascular phenotype
  • p.Glu168= Single submitter Cardiovascular phenotype
  • p.Glu189Ala Single submitter Cardiovascular phenotype
  • p.Glu255= Single submitter Cardiovascular phenotype
  • p.Gly155= Single submitter Cardiovascular phenotype
  • p.Gly164= Single submitter
  • p.Gly165= Single submitter Cardiovascular phenotype
  • p.Gly175= Single submitter Cardiovascular phenotype
  • p.Gly334= Single submitter Cardiovascular phenotype
  • p.Ile303= Single submitter Cardiovascular phenotype
  • p.Leu173= Single submitter Cardiovascular phenotype
  • p.Leu198= Single submitter Cardiovascular phenotype
  • p.Leu209= Single submitter Cardiovascular phenotype
  • p.Leu231= Single submitter Cardiovascular phenotype
  • p.Leu250= Single submitter Cardiovascular phenotype
  • p.Leu253= Single submitter Cardiovascular phenotype
  • p.Leu294= Single submitter
  • p.Leu96= Single submitter Cardiovascular phenotype
  • p.Lys104= Single submitter Cardiovascular phenotype
  • p.Lys188= Single submitter Cardiovascular phenotype
  • p.Lys238= Single submitter Cardiovascular phenotype
  • p.Lys25= Single submitter Cardiovascular phenotype
  • p.Lys48= Single submitter Cardiovascular phenotype
  • p.Phe187Val Single submitter Cardiovascular phenotype
  • p.Pro193= Single submitter Cardiovascular phenotype
  • p.Pro215Ser Single submitter Cardiovascular phenotype
  • p.Pro221= Single submitter Cardiovascular phenotype
  • p.Pro83= Single submitter Cardiovascular phenotype
  • p.Pro89= Single submitter Cardiovascular phenotype
  • p.Ser19= Single submitter Cardiovascular phenotype
  • p.Ser197Arg Single submitter Cardiovascular phenotype
  • p.Ser200Thr Single submitter Cardiovascular phenotype
  • p.Ser220= Single submitter Cardiovascular phenotype
  • p.Ser225= Single submitter Cardiovascular phenotype
  • p.Ser35= Single submitter Cardiovascular phenotype
  • p.Ser80Arg Single submitter Cardiovascular phenotype
  • p.Thr292= Single submitter Cardiovascular phenotype
  • p.Tyr194= Single submitter Cardiovascular phenotype
  • p.Tyr293= Single submitter Cardiovascular phenotype
  • p.Val153= Single submitter Cardiovascular phenotype
  • p.Val41Met Single submitter Cardiovascular phenotype
  • p.Val90= Single submitter Cardiovascular phenotype
  • p.Asp273= No assertion criteria APOA5-related disorder

Uncertain significance 188