AQP4 — 50 ClinVar variants
All ClinVar germline AQP4 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 38 flagged for review →
1 Pathogenic · 1 Likely pathogenic · 1 Conflicting · 5 Benign · 5 Likely benign · 37 Uncertain significance
Full AQP4 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 38
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
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AQP4 p.Ser111Thr
Likely pathogenic
No assertion criteria
intellectual disability
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 22
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- AQP4 p.Ala156Ser Uncertain significance Single submitter
- AQP4 p.Ala265Val Uncertain significance Single submitter
- AQP4 p.Asp291Glu Uncertain significance Single submitter
- AQP4 p.Gln271Arg Uncertain significance Single submitter
- AQP4 p.Glu288Gln Uncertain significance Single submitter
- AQP4 p.Gly307Arg Uncertain significance Single submitter
- AQP4 p.His201Arg Uncertain significance Single submitter
- AQP4 p.Ile22Met Uncertain significance Single submitter
- AQP4 p.Ile232Thr Uncertain significance Single submitter
- AQP4 p.Ile232Val Uncertain significance Single submitter
- AQP4 p.Leu72Phe Uncertain significance Single submitter
- AQP4 p.Lys64Glu Uncertain significance Single submitter
- AQP4 p.Met224Leu Uncertain significance Single submitter
- AQP4 p.Met70Ile Uncertain significance Single submitter
- AQP4 p.Phe195Leu Uncertain significance Single submitter
- AQP4 p.Pro296Arg Uncertain significance Single submitter
- AQP4 p.Trp10Cys Uncertain significance Single submitter
- AQP4 p.Tyr134His Uncertain significance Single submitter
- AQP4 p.Val150Ile Uncertain significance Single submitter
- AQP4 p.Val171Ala Uncertain significance Single submitter
- AQP4 p.Val29Ile Uncertain significance Single submitter
- AQP4 p.Val319Ile Uncertain significance Single submitter
Predictors split 14
The independent predictors disagree with each other — read with care.
- AQP4 p.Arg260Cys Uncertain significance Single submitter
- AQP4 p.Arg306Trp Uncertain significance Single submitter
- AQP4 p.Cys123Phe Uncertain significance Single submitter
- AQP4 p.Gly129Ala Uncertain significance Single submitter
- AQP4 p.Gly312Trp Uncertain significance Single submitter
- AQP4 p.Gly60Asp Uncertain significance Single submitter
- AQP4 p.Ile132Thr Uncertain significance Single submitter
- AQP4 p.Ile189Thr Uncertain significance Single submitter
- AQP4 p.Ile22Thr Uncertain significance Single submitter
- AQP4 p.Ile238Met Uncertain significance Single submitter
- AQP4 p.Met104Val Uncertain significance Single submitter
- AQP4 p.Met84Val Uncertain significance Single submitter
- AQP4 p.Phe203Leu Uncertain significance Single submitter
- AQP4 p.Val136Phe Uncertain significance Single submitter
All AQP4 variants
Pathogenic 1
- p.Ala215Thr No assertion criteria megalencephalic leukoencephalopathy with subcortical cysts 4, remitting
Likely pathogenic 1
- p.Ser111Thr No assertion criteria intellectual disability ⚠
Conflicting classifications of pathogenicity 1
- p.Phe34Leu Single submitter ⚠
Benign 5
- p.Asp184Glu Multiple submitters
- p.Thr273= Multiple submitters
- p.Arg9= Single submitter
- p.Val298= Single submitter
- p.Pro67= No assertion criteria AQP4-related disorder
Likely benign 5
- p.Ile193Thr Multiple submitters
- p.Lys27Arg Single submitter
- p.Arg19Thr No assertion criteria AQP4-related disorder
- p.Ile128Thr No assertion criteria AQP4-related disorder
- p.Thr289Met No assertion criteria EBV-positive nodal T- and NK-cell lymphoma
Uncertain significance 37
- p.Ala156Ser Single submitter ⚠
- p.Ala265Val Single submitter ⚠
- p.Arg216Ter Single submitter megalencephalic leukoencephalopathy with subcortical cysts 4, remitting
- p.Arg260Cys Single submitter ⚠
- p.Arg306Trp Single submitter ⚠
- p.Asp291Glu Single submitter ⚠
- p.Cys123Phe Single submitter ⚠
- p.Gln271Arg Single submitter ⚠
- p.Glu288Gln Single submitter ⚠
- p.Gly129Ala Single submitter ⚠
- p.Gly307Arg Single submitter ⚠
- p.Gly312Trp Single submitter ⚠
- p.Gly60Asp Single submitter ⚠
- p.His201Arg Single submitter ⚠
- p.Ile132Thr Single submitter ⚠
- p.Ile189Thr Single submitter ⚠
- p.Ile22Met Single submitter ⚠
- p.Ile22Thr Single submitter ⚠
- p.Ile232Thr Single submitter ⚠
- p.Ile232Val Single submitter ⚠
- p.Ile238Met Single submitter ⚠
- p.Leu72Phe Single submitter ⚠
- p.Lys64Glu Single submitter ⚠
- p.Met104Val Single submitter ⚠
- p.Met224Leu Single submitter ⚠
- p.Met70Ile Single submitter ⚠
- p.Met84Val Single submitter ⚠
- p.Phe195Leu Single submitter ⚠
- p.Phe203Leu Single submitter ⚠
- p.Pro296Arg Single submitter ⚠
- p.Trp10Cys Single submitter ⚠
- p.Tyr134His Single submitter ⚠
- p.Val136Phe Single submitter ⚠
- p.Val150Ile Single submitter ⚠
- p.Val171Ala Single submitter ⚠
- p.Val29Ile Single submitter ⚠
- p.Val319Ile Single submitter ⚠