ARL6 — 282 ClinVar variants

All ClinVar germline ARL6 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 83 flagged for review →

24 Pathogenic · 7 Pathogenic/Likely pathogenic · 18 Likely pathogenic · 10 Conflicting · 11 Benign · 3 Benign/Likely benign · 112 Likely benign · 97 Uncertain significance

Full ARL6 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 83

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 47

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 31

The independent predictors disagree with each other — read with care.

All ARL6 variants

Pathogenic 24

  • c.185+1G>C Multiple submitters ARL6-related disorder
  • c.255-2A>T Multiple submitters retinitis pigmentosa 55
  • p.Arg122Ter Multiple submitters retinitis pigmentosa 55
  • p.Gly2Ter Multiple submitters Bardet-Biedl syndrome 1
  • p.Thr31Met Multiple submitters retinitis pigmentosa 55
  • p.Arg101Ile Single submitter Bardet-Biedl syndrome
  • p.Asn130fs Single submitter inherited retinal dystrophy
  • p.Asp136fs Single submitter Bardet-Biedl syndrome 3
  • p.Asp179Asn Single submitter Bardet-Biedl syndrome ⚠
  • p.Cys22Ter Single submitter Bardet-Biedl syndrome 3
  • p.Gln43Ter Single submitter Bardet-Biedl syndrome 3
  • p.Gln88Ter Single submitter Bardet-Biedl syndrome 3
  • p.Gly169fs Single submitter retinitis pigmentosa 55
  • p.Ile125fs Single submitter retinitis pigmentosa 55
  • p.Leu63Ter Single submitter Bardet-Biedl syndrome 3
  • p.Met1Val Single submitter Bardet-Biedl syndrome 3
  • p.Trp157fs Single submitter Bardet-Biedl syndrome 3
  • p.Trp176Cys Single submitter Bardet-Biedl syndrome
  • p.Tyr84Ter Single submitter Bardet-Biedl syndrome 3
  • c.185+1G>A No assertion criteria
  • c.186-2A>C No assertion criteria inherited retinal dystrophy
  • p.Asp117fs No assertion criteria Bardet-Biedl syndrome 3
  • p.Leu126Ter No assertion criteria Bardet-Biedl syndrome 3
  • p.Leu170Trp No assertion criteria Bardet-Biedl syndrome 3

Pathogenic/Likely pathogenic 7

  • c.350-2A>C Multiple submitters retinitis pigmentosa 55
  • p.Gln178= Multiple submitters Bardet-Biedl syndrome 3
  • p.Gly169Ala Multiple submitters Bardet-Biedl syndrome 3
  • p.Ile91Thr Multiple submitters Bardet-Biedl syndrome
  • p.Ile94Thr Multiple submitters Bardet-Biedl syndrome 1 ⚠
  • p.Thr31Arg Multiple submitters Bardet-Biedl syndrome 3
  • p.Tyr76Ter Multiple submitters retinitis pigmentosa 55

Likely pathogenic 18

Conflicting classifications of pathogenicity 10

Benign 11

Benign/Likely benign 3

  • c.480-8C>T Multiple submitters retinitis pigmentosa
  • p.Ser64= Multiple submitters retinitis pigmentosa 55
  • c.*255C>T Single submitter retinitis pigmentosa

Likely benign 112

  • c.255-49A>G Multiple submitters
  • c.350-7C>T Multiple submitters Bardet-Biedl syndrome 1
  • c.535+122A>G Multiple submitters
  • p.Ala161Ser Multiple submitters retinitis pigmentosa 55
  • p.Ser144= Multiple submitters Bardet-Biedl syndrome 3
  • c.123+12T>C Single submitter Bardet-Biedl syndrome 3
  • c.123+16A>G Single submitter Bardet-Biedl syndrome 3
  • c.123+19T>C Single submitter retinitis pigmentosa 55
  • c.123+19T>G Single submitter Bardet-Biedl syndrome 3
  • c.124-13T>G Single submitter Bardet-Biedl syndrome 3
  • c.124-16G>A Single submitter retinitis pigmentosa 55
  • c.124-16G>T Single submitter retinitis pigmentosa 55
  • c.124-17T>C Single submitter Bardet-Biedl syndrome 3
  • c.124-20C>G Single submitter retinitis pigmentosa 55
  • c.185+15C>G Single submitter Bardet-Biedl syndrome 3
  • c.185+15C>T Single submitter Bardet-Biedl syndrome 3
  • c.185+16C>T Single submitter Bardet-Biedl syndrome 3
  • c.185+7C>A Single submitter retinitis pigmentosa 55
  • c.185+9C>T Single submitter Bardet-Biedl syndrome 3
  • c.186-5T>G Single submitter Bardet-Biedl syndrome 3
  • c.254+12T>A Single submitter Bardet-Biedl syndrome 3
  • c.254+13G>A Single submitter Bardet-Biedl syndrome 3
  • c.254+7A>G Single submitter Bardet-Biedl syndrome 3
  • c.254+8C>T Single submitter Bardet-Biedl syndrome 3
  • c.254+9A>C Single submitter retinitis pigmentosa 55
  • c.255-10C>T Single submitter Bardet-Biedl syndrome 3
  • c.255-15C>A Single submitter retinitis pigmentosa 55
  • c.255-16T>C Single submitter Bardet-Biedl syndrome 3
  • c.255-17T>G Single submitter retinitis pigmentosa 55
  • c.255-5C>T Single submitter Bardet-Biedl syndrome 3
  • c.255-6A>T Single submitter Bardet-Biedl syndrome 3
  • c.255-7del Single submitter retinitis pigmentosa 55
  • c.349+19G>A Single submitter retinitis pigmentosa 55
  • c.349+36G>A Single submitter
  • c.349+7G>A Single submitter Bardet-Biedl syndrome 3
  • c.349+9G>A Single submitter retinitis pigmentosa 55
  • c.350-14_350-12del Single submitter Bardet-Biedl syndrome 3
  • c.350-14A>G Single submitter Bardet-Biedl syndrome 3
  • c.350-18T>C Single submitter Bardet-Biedl syndrome 3
  • c.350-20A>G Single submitter Bardet-Biedl syndrome 3
  • c.350-6T>G Single submitter Bardet-Biedl syndrome 3
  • c.350-7_350-6del Single submitter retinitis pigmentosa 55
  • c.350-8T>C Single submitter retinitis pigmentosa 55
  • c.350-9C>T Single submitter retinitis pigmentosa 55
  • c.479+10T>G Single submitter retinitis pigmentosa 55
  • c.479+13A>G Single submitter Bardet-Biedl syndrome 3
  • c.479+14T>C Single submitter Bardet-Biedl syndrome 3
  • c.479+17_479+20del Single submitter Bardet-Biedl syndrome 3
  • c.479+7T>C Single submitter retinitis pigmentosa 55
  • c.480-10T>A Single submitter Bardet-Biedl syndrome 3
  • c.480-12A>T Single submitter Bardet-Biedl syndrome 3
  • c.480-13G>A Single submitter Bardet-Biedl syndrome 3
  • c.480-15T>C Single submitter Bardet-Biedl syndrome 3
  • c.480-16A>G Single submitter Bardet-Biedl syndrome 3
  • c.480-20T>C Single submitter retinitis pigmentosa 55
  • c.535+11A>G Single submitter Bardet-Biedl syndrome 3
  • c.535+16C>A Single submitter Bardet-Biedl syndrome 3
  • c.535+17T>G Single submitter Bardet-Biedl syndrome 3
  • c.535+8A>G Single submitter Bardet-Biedl syndrome 3
  • c.536-15_536-12del Single submitter Bardet-Biedl syndrome 3
  • c.536-8G>A Single submitter Bardet-Biedl syndrome 3
  • p.Ala161= Single submitter Bardet-Biedl syndrome 3
  • p.Ala42= Single submitter Bardet-Biedl syndrome 3
  • p.Ala89= Single submitter Bardet-Biedl syndrome 3
  • p.Asn151= Single submitter Bardet-Biedl syndrome 3
  • p.Asn27= Single submitter Bardet-Biedl syndrome 3
  • p.Asp110= Single submitter Bardet-Biedl syndrome 3
  • p.Asp154= Single submitter Bardet-Biedl syndrome 3
  • p.Asp69= Single submitter Bardet-Biedl syndrome 3
  • p.Asp98= Single submitter retinitis pigmentosa 55
  • p.Gln43= Single submitter Bardet-Biedl syndrome 3
  • p.Gly167= Single submitter Bardet-Biedl syndrome 3
  • p.Gly173= Single submitter Bardet-Biedl syndrome 3
  • p.Gly87= Single submitter Bardet-Biedl syndrome 3
  • p.His120= Single submitter Bardet-Biedl syndrome 3
  • p.His158= Single submitter retinitis pigmentosa 55
  • p.Ile181= Single submitter Bardet-Biedl syndrome 3
  • p.Ile33= Single submitter retinitis pigmentosa 55
  • p.Ile47= Single submitter retinitis pigmentosa 55
  • p.Ile51= Single submitter retinitis pigmentosa 55
  • p.Leu10= Single submitter retinitis pigmentosa 55
  • p.Leu100= Single submitter Bardet-Biedl syndrome 3
  • p.Leu109= Single submitter Bardet-Biedl syndrome 3
  • p.Leu11= Single submitter Bardet-Biedl syndrome 3
  • p.Leu112= Single submitter Bardet-Biedl syndrome 3
  • p.Leu146= Single submitter retinitis pigmentosa 55
  • p.Leu170= Single submitter Bardet-Biedl syndrome 3
  • p.Leu21= Single submitter retinitis pigmentosa 55
  • p.Leu25= Single submitter retinitis pigmentosa 55
  • p.Leu4= Single submitter Bardet-Biedl syndrome 3
  • p.Phe128= Single submitter Bardet-Biedl syndrome 3
  • p.Pro116= Single submitter Bardet-Biedl syndrome 3
  • p.Pro124= Single submitter Bardet-Biedl syndrome 3
  • p.Pro156= Single submitter Bardet-Biedl syndrome 3
  • p.Pro49= Single submitter Bardet-Biedl syndrome 3
  • p.Ser71= Single submitter retinitis pigmentosa 55
  • p.Ser8= Single submitter retinitis pigmentosa 55
  • p.Thr186= Single submitter Bardet-Biedl syndrome 3
  • p.Thr31= Single submitter retinitis pigmentosa 55
  • p.Thr32= Single submitter retinitis pigmentosa 55
  • p.Thr50= Single submitter Bardet-Biedl syndrome 3
  • p.Tyr83= Single submitter Bardet-Biedl syndrome 3
  • p.Val138= Single submitter Bardet-Biedl syndrome 3
  • p.Val67= Single submitter Bardet-Biedl syndrome 3
  • c.185+5T>C No assertion criteria ARL6-related disorder
  • c.480-23G>A No assertion criteria ARL6-related disorder
  • c.480-25A>G No assertion criteria ARL6-related disorder
  • c.535+10A>G No assertion criteria ARL6-related disorder
  • p.Asp175= No assertion criteria ARL6-related disorder
  • p.Ile152= No assertion criteria ARL6-related disorder
  • p.Ile91= No assertion criteria ARL6-related disorder
  • p.Val18= No assertion criteria ARL6-related disorder

Uncertain significance 97