ASAH1 — 970 ClinVar variants

All ClinVar germline ASAH1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 309 flagged for review →

57 Pathogenic · 13 Pathogenic/Likely pathogenic · 50 Likely pathogenic · 27 Conflicting · 107 Benign · 9 Benign/Likely benign · 366 Likely benign · 341 Uncertain significance

Full ASAH1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 309

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 6

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 9

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 140

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 154

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 154

All ASAH1 variants

Pathogenic 57

Pathogenic/Likely pathogenic 13

  • c.1098+1G>T Multiple submitters Farber lipogranulomatosis
  • c.457+4A>G Multiple submitters Farber lipogranulomatosis
  • p.Arg333Cys Multiple submitters Farber lipogranulomatosis
  • p.Arg333Gly Multiple submitters Farber lipogranulomatosis
  • p.Glu138Ter Multiple submitters Farber lipogranulomatosis
  • p.Met1Ile Multiple submitters spinal muscular atrophy-progressive myoclonic epilepsy syndrome
  • p.Pro362Arg Multiple submitters Farber lipogranulomatosis
  • p.Thr42Met Multiple submitters ASAH1-related disorders ⚠
  • p.Trp169Arg Multiple submitters Farber lipogranulomatosis
  • p.Trp49Ter Multiple submitters spinal muscular atrophy-progressive myoclonic epilepsy syndrome
  • p.Trp62Ter Multiple submitters Farber lipogranulomatosis
  • p.Tyr137Cys Multiple submitters ASAH1-related disorders
  • p.Tyr36Cys Multiple submitters Farber lipogranulomatosis ⚠

Likely pathogenic 50

Conflicting classifications of pathogenicity 27

  • c.126-7A>G Single submitter
  • c.216+6C>G Single submitter
  • c.382+10A>G Single submitter Farber lipogranulomatosis
  • c.382+9C>G Single submitter Farber lipogranulomatosis
  • c.457+7G>A Single submitter Farber lipogranulomatosis
  • c.504-4A>G Single submitter Inborn genetic diseases
  • c.648+5G>C Single submitter Farber lipogranulomatosis
  • c.-6A>G Single submitter Farber lipogranulomatosis
  • p.Arg12Pro Single submitter ASAH1-related sphingolipidosis
  • p.Arg333His Single submitter Farber lipogranulomatosis ⚠
  • p.Arg61= Single submitter Farber lipogranulomatosis
  • p.Asp30Asn Single submitter fetal akinesia deformation sequence 1 ⚠
  • p.Asp331Asn Single submitter Farber lipogranulomatosis ⚠
  • p.Asp332His Single submitter ⚠
  • p.Gly164Val Single submitter arthrogryposis multiplex congenita ⚠
  • p.Gly40Arg Single submitter spinal muscular atrophy-progressive myoclonic epilepsy syndrome ⚠
  • p.Leu257= Single submitter Farber lipogranulomatosis
  • p.Leu385= Single submitter Farber lipogranulomatosis
  • p.Leu73= Single submitter
  • p.Leu9Phe Single submitter Inborn genetic diseases ⚠
  • p.Met210Thr Single submitter Farber lipogranulomatosis ⚠
  • p.Phe87= Single submitter Farber lipogranulomatosis
  • p.Ser36fs Single submitter
  • p.Thr179Ile Single submitter spinal muscular atrophy-progressive myoclonic epilepsy syndrome ⚠
  • p.Thr335Met Single submitter Farber lipogranulomatosis ⚠
  • p.Thr42Ala Single submitter spinal muscular atrophy-progressive myoclonic epilepsy syndrome ⚠
  • p.Val369= Single submitter Farber lipogranulomatosis

Benign 107

Benign/Likely benign 9

Likely benign 366

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 341

Showing the top 300 by review status; the full set is in the sitemap.