ASH1L — 1043 ClinVar variants

All ClinVar germline ASH1L variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 245 flagged for review →

64 Pathogenic · 5 Pathogenic/Likely pathogenic · 42 Likely pathogenic · 28 Conflicting · 23 Benign · 6 Benign/Likely benign · 172 Likely benign · 703 Uncertain significance

Full ASH1L gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 245

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 9

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 2

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 222

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 222

All ASH1L variants

Pathogenic 64

Pathogenic/Likely pathogenic 5

  • p.Arg1280Ter Multiple submitters intellectual disability, autosomal dominant 52
  • p.Arg712fs Multiple submitters intellectual disability, autosomal dominant 52
  • p.Arg778Ter Multiple submitters intellectual disability, autosomal dominant 52
  • p.Lys1347fs Multiple submitters intellectual disability, autosomal dominant 52
  • p.Ser1635fs Multiple submitters ASH1L-related disorder

Likely pathogenic 42

  • p.Arg1757Ter Multiple submitters intellectual disability, autosomal dominant 52
  • p.Asn1551fs Multiple submitters intellectual disability, autosomal dominant 52
  • p.Gly651fs Multiple submitters intellectual disability, autosomal dominant 52
  • p.Ala2712fs Single submitter intellectual disability, autosomal dominant 52
  • p.Arg1321Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Arg2007Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Arg2364Ter Single submitter ASH1L-related disorder
  • p.Arg2653Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Arg54Ter Single submitter
  • p.Arg895fs Single submitter
  • p.Asp2044Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Cys1579fs Single submitter intellectual disability, autosomal dominant 52
  • p.Gln1075fs Single submitter intellectual disability, autosomal dominant 52
  • p.Gln1859Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Gln2046Ter Single submitter neurodevelopmental disorder
  • p.Gln2660Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Gln2903Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Gln896_Met897insAlaTer Single submitter ASH1L-related disorder
  • p.Glu1236fs Single submitter intellectual disability, autosomal dominant 52
  • p.Glu1292fs Single submitter ASH1L-related disorder
  • p.Gly1430Val Single submitter intellectual disability, autosomal dominant 52
  • p.Gly1710fs Single submitter intellectual disability, autosomal dominant 52
  • p.Gly714fs Single submitter intellectual disability, autosomal dominant 52
  • p.Ile2395fs Single submitter intellectual disability, autosomal dominant 52
  • p.Ile2930fs Single submitter intellectual disability, autosomal dominant 52
  • p.Leu1070Ter Single submitter syndromic complex neurodevelopmental disorder
  • p.Leu709fs Single submitter intellectual disability, autosomal dominant 52
  • p.Lys2041fs Single submitter ASH1L-related disorder
  • p.Lys44fs Single submitter ASH1L-related disorder
  • p.Met1356fs Single submitter intellectual disability, autosomal dominant 52
  • p.Phe936fs Single submitter
  • p.Pro717fs Single submitter intellectual disability, autosomal dominant 52
  • p.Ser1326fs Single submitter intellectual disability, autosomal dominant 52
  • p.Ser1580Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Ser2453Pro Single submitter ASH1L-related disorder ⚠
  • p.Ser636Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Tyr1528Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Tyr2253Ter Single submitter intellectual disability, autosomal dominant 52
  • p.Tyr2499fs Single submitter intellectual disability, autosomal dominant 52
  • p.Arg2691Ter No assertion criteria
  • p.Glu493fs No assertion criteria ASH1L-related disorder
  • p.Val2602Leu No assertion criteria intellectual disability, autosomal dominant 52

Conflicting classifications of pathogenicity 28

  • c.8803+5G>A Single submitter intellectual disability, autosomal dominant 52
  • p.Ala246Pro Single submitter intellectual disability, autosomal dominant 52 ⚠
  • p.Arg109Gln Single submitter intellectual disability, autosomal dominant 52
  • p.Arg2073His Single submitter autism spectrum disorder
  • p.Arg2533Cys Single submitter Inborn genetic diseases
  • p.Arg2533His Single submitter intellectual disability
  • p.Arg2881Trp Single submitter intellectual disability, autosomal dominant 52 ⚠
  • p.Arg2963Ter Single submitter Inborn genetic diseases ⚠
  • p.Arg52Trp Single submitter intellectual disability, autosomal dominant 52 ⚠
  • p.Arg778Gln Single submitter Inborn genetic diseases ⚠
  • p.Asn2349Ser Single submitter intellectual disability, autosomal dominant 52
  • p.Asp1763Gly Single submitter Inborn genetic diseases
  • p.Asp63Gly Single submitter Inborn genetic diseases ⚠
  • p.Cys747Arg Single submitter intellectual disability, autosomal dominant 52
  • p.Gln1806Glu Single submitter
  • p.Gln879Arg Single submitter Inborn genetic diseases
  • p.Glu156Lys Single submitter intellectual disability, autosomal dominant 52 ⚠
  • p.Ile1295Val Single submitter Inborn genetic diseases ⚠
  • p.Ile2452= Single submitter intellectual disability, autosomal dominant 52
  • p.Ile867Val Single submitter Inborn genetic diseases
  • p.Leu1002fs Single submitter intellectual disability, autosomal dominant 52 ⚠
  • p.Met1427Val Single submitter ASH1L-related disorder
  • p.Ser1495Phe Single submitter intellectual disability, autosomal dominant 52
  • p.Ser575Ala Single submitter intellectual disability, autosomal dominant 52 ⚠
  • p.Ser74Leu Single submitter intellectual disability, autosomal dominant 52
  • p.Ser796Asn Single submitter intellectual disability, autosomal dominant 52
  • p.Thr192Ala Single submitter intellectual disability, autosomal dominant 52 ⚠
  • p.Val1128Ala Single submitter

Benign 23

Benign/Likely benign 6

  • p.Ala1598Val Multiple submitters Inborn genetic diseases
  • p.Arg777His Multiple submitters intellectual disability, autosomal dominant 52
  • p.Glu1725= Multiple submitters intellectual disability, autosomal dominant 52
  • p.Ile1107Val Multiple submitters
  • p.Pro1198= Multiple submitters
  • p.Pro1961Ser Multiple submitters Inborn genetic diseases

Likely benign 172

Uncertain significance 703

Showing the top 300 by review status; the full set is in the sitemap.