ATP1A2 — 1544 ClinVar variants

All ClinVar germline ATP1A2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 586 flagged for review →

57 Pathogenic · 16 Pathogenic/Likely pathogenic · 66 Likely pathogenic · 86 Conflicting · 95 Benign · 41 Benign/Likely benign · 505 Likely benign · 678 Uncertain significance

Full ATP1A2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 586

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 45

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 428

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 428

Predictors split 113

The independent predictors disagree with each other — read with care.

All ATP1A2 variants

Pathogenic 57

  • p.Ala606Thr Multiple submitters Paroxysmal central nervous system disorders
  • p.Arg548Cys Multiple submitters familial hemiplegic migraine
  • p.Arg548His Multiple submitters developmental and epileptic encephalopathy 98
  • p.Arg604Ter Multiple submitters familial hemiplegic migraine
  • p.Arg834Gln Multiple submitters familial hemiplegic migraine
  • p.Glu547fs Multiple submitters familial hemiplegic migraine
  • p.Glu957Ter Multiple submitters polymicrogyria
  • p.Gly301Arg Multiple submitters familial hemiplegic migraine
  • p.Gly715Arg Multiple submitters familial hemiplegic migraine
  • p.Gly855Arg Multiple submitters ATP1A2-related disorder
  • p.Gly855Glu Multiple submitters familial hemiplegic migraine
  • p.Ile293Met Multiple submitters Inborn genetic diseases
  • p.Lys485Ter Multiple submitters familial hemiplegic migraine
  • p.Pro979Leu Multiple submitters ATP1A2-related disorder
  • p.Val628Met Multiple submitters familial hemiplegic migraine
  • c.1216+1G>T Single submitter
  • c.2285-2A>C Single submitter spastic ataxia
  • p.Ala13fs Single submitter alternating hemiplegia of childhood 1
  • p.Ala824_Glu825insTer Single submitter familial hemiplegic migraine
  • p.Arg202Gln Single submitter familial hemiplegic migraine
  • p.Arg279fs Single submitter fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Arg469Ter Single submitter familial hemiplegic migraine
  • p.Arg593Leu Single submitter familial hemiplegic migraine
  • p.Asn63fs Single submitter familial hemiplegic migraine
  • p.Asn717Lys Single submitter
  • p.Asp812His Single submitter familial hemiplegic migraine
  • p.Asp839fs Single submitter familial hemiplegic migraine
  • p.Asp999His Single submitter
  • p.Cys341Phe Single submitter developmental and epileptic encephalopathy 98
  • p.Cys581Ter Single submitter familial hemiplegic migraine
  • p.Cys702fs Single submitter familial hemiplegic migraine
  • p.Gln487Ter Single submitter migraine, familial hemiplegic, 2
  • p.Gln832Ter Single submitter familial hemiplegic migraine
  • p.Glu524Ter Single submitter familial hemiplegic migraine
  • p.Glu760fs Single submitter fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Gly194Ter Single submitter familial hemiplegic migraine
  • p.Gly366Val Single submitter familial hemiplegic migraine
  • p.Gly377Val Single submitter familial hemiplegic migraine
  • p.Ile100fs Single submitter polymicrogyria
  • p.Ile240fs Single submitter familial hemiplegic migraine
  • p.Ile286fs Single submitter familial hemiplegic migraine
  • p.Ile290fs Single submitter familial hemiplegic migraine
  • p.Ile708fs Single submitter familial hemiplegic migraine
  • p.Ile995fs Single submitter familial hemiplegic migraine
  • p.Leu994del Single submitter familial hemiplegic migraine
  • p.Lys175fs Single submitter familial hemiplegic migraine
  • p.Lys375Arg Single submitter familial hemiplegic migraine
  • p.Pro331Ala Single submitter familial hemiplegic migraine
  • p.Pro786Leu Single submitter familial hemiplegic migraine
  • p.Thr811Arg Single submitter familial hemiplegic migraine
  • p.Trp903Ter Single submitter familial hemiplegic migraine
  • p.Val610fs Single submitter familial hemiplegic migraine
  • p.Val709fs Single submitter familial hemiplegic migraine
  • p.Leu764Pro No assertion criteria migraine, familial hemiplegic, 2
  • p.Thr345Ala No assertion criteria migraine, familial hemiplegic, 2
  • p.Trp887Arg No assertion criteria migraine, familial hemiplegic, 2
  • p.Val191Met No assertion criteria migraine, familial hemiplegic, 2 ⚠

Pathogenic/Likely pathogenic 16

  • p.Ala297Thr Multiple submitters ATP1A2-related disorder
  • p.Arg1002Gln Multiple submitters familial hemiplegic migraine
  • p.Arg383His Multiple submitters familial hemiplegic migraine
  • p.Arg412Ter Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Arg421Ter Multiple submitters familial hemiplegic migraine
  • p.Arg493Ter Multiple submitters familial hemiplegic migraine
  • p.Arg908Gln Multiple submitters ATP1A2-related disorder
  • p.Gly366Ser Multiple submitters developmental and epileptic encephalopathy 98
  • p.Gly615Arg Multiple submitters familial hemiplegic migraine
  • p.Gly701fs Multiple submitters familial hemiplegic migraine
  • p.Met813Lys Multiple submitters developmental and epileptic encephalopathy 98
  • p.Thr263Met Multiple submitters migraine, familial hemiplegic, 2
  • p.Thr364Met Multiple submitters ATP1A2-related disorder
  • p.Thr376Met Multiple submitters ATP1A2-related disorder
  • p.Thr378Asn Multiple submitters ATP1A2-related disorder
  • p.Tyr1009Ter Multiple submitters familial hemiplegic migraine

Likely pathogenic 66

  • p.Arg689Gln Multiple submitters migraine, familial hemiplegic, 2
  • p.Arg937Cys Multiple submitters alternating hemiplegia of childhood 1
  • p.Arg937His Multiple submitters Inborn genetic diseases
  • p.Cys341Tyr Multiple submitters developmental and epileptic encephalopathy 98
  • p.Gly900Arg Multiple submitters migraine, familial hemiplegic, 2
  • p.Phe305del Multiple submitters Inborn genetic diseases
  • c.1017+5G>A Single submitter
  • c.117+1G>A Single submitter
  • c.12+1G>A Single submitter familial hemiplegic migraine
  • c.12+2T>A Single submitter migraine, familial hemiplegic, 2
  • c.1326+2T>C Single submitter familial hemiplegic migraine
  • c.1652-1G>T Single submitter familial hemiplegic migraine
  • c.177+2T>G Single submitter familial hemiplegic migraine
  • c.178-2A>G Single submitter familial hemiplegic migraine
  • c.1965-2A>G Single submitter familial hemiplegic migraine
  • c.2284+1G>A Single submitter familial hemiplegic migraine
  • c.2440-1G>T Single submitter familial hemiplegic migraine
  • c.2563+2T>C Single submitter familial hemiplegic migraine
  • c.381+1G>A Single submitter familial hemiplegic migraine
  • c.495+2T>C Single submitter familial hemiplegic migraine
  • c.496-1G>A Single submitter familial hemiplegic migraine
  • p.Ala606Glu Single submitter
  • p.Arg202Trp Single submitter familial hemiplegic migraine
  • p.Arg763Leu Single submitter fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Arg834Leu Single submitter familial hemiplegic migraine
  • p.Arg937fs Single submitter alternating hemiplegia of childhood
  • p.Asp930Val Single submitter hemiplegic migraine-developmental and epileptic encephalopathy spectrum
  • p.Cys143fs Single submitter ATP1A2-related disorder
  • p.Cys341Arg Single submitter developmental and epileptic encephalopathy 98
  • p.Gln943Ter Single submitter
  • p.Glu276Ter Single submitter epilepsy
  • p.Gly105Glu Single submitter ATP1A2-related disorder
  • p.Gly295fs Single submitter
  • p.Gly301Glu Single submitter familial hemiplegic migraine
  • p.Gly333Arg Single submitter developmental and epileptic encephalopathy
  • p.Gly544fs Single submitter
  • p.Gly551Ter Single submitter epilepsy
  • p.Ile139fs Single submitter fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Ile286Thr Single submitter familial hemiplegic migraine
  • p.Ile320Asn Single submitter migraine, familial hemiplegic, 2
  • p.Leu300Pro Single submitter ATP1A2-related disorder
  • p.Leu379fs Single submitter
  • p.Leu545fs Single submitter
  • p.Met731Thr Single submitter migraine, familial hemiplegic, 2
  • p.Met829Val Single submitter familial hemiplegic migraine
  • p.Pro796Arg Single submitter
  • p.Pro815Arg Single submitter migraine, familial hemiplegic, 2
  • p.Pro979Lys Single submitter alternating hemiplegia of childhood 1
  • p.Ser691fs Single submitter
  • p.Ser691Phe Single submitter
  • p.Ser779Asn Single submitter alternating hemiplegia of childhood 1
  • p.Ter1021Arg Single submitter
  • p.Ter1021TyrextTer? Single submitter
  • p.Thr368Met Single submitter familial hemiplegic migraine
  • p.Thr378Pro Single submitter developmental and epileptic encephalopathy 98
  • p.Thr690Lys Single submitter migraine, familial hemiplegic, 2
  • p.Thr712Met Single submitter migraine, familial hemiplegic, 2
  • p.Tyr775Asp Single submitter
  • p.Val362Met Single submitter
  • p.Val600Ala Single submitter
  • p.Val88fs Single submitter ATP1A2-related disorder
  • p.Val926Leu Single submitter
  • c.1216+1G>A No assertion criteria ATP1A2-related disorder
  • c.2285-1G>A No assertion criteria ATP1A2-related disorder
  • p.Arg1008fs No assertion criteria hemiplegia
  • p.Ile630Leu No assertion criteria migraine, familial hemiplegic, 2

Conflicting classifications of pathogenicity 86

  • c.1216+5T>C Single submitter familial hemiplegic migraine
  • c.1216+5T>G Single submitter familial hemiplegic migraine
  • c.1652-8C>T Single submitter familial hemiplegic migraine
  • c.1827+13C>T Single submitter familial hemiplegic migraine
  • c.2115+8C>T Single submitter familial hemiplegic migraine
  • c.2116-19G>A Single submitter familial hemiplegic migraine
  • c.2285-7C>T Single submitter alternating hemiplegia of childhood 1
  • c.2439+6C>T Single submitter familial hemiplegic migraine
  • c.2563+15G>A Single submitter familial hemiplegic migraine
  • c.2564-14C>T Single submitter familial hemiplegic migraine
  • c.3034+6C>A Single submitter familial hemiplegic migraine
  • c.748+1G>C Single submitter Inborn genetic diseases
  • c.*932T>C Single submitter migraine, familial hemiplegic, 2
  • p.Ala272Thr Single submitter familial hemiplegic migraine ⚠
  • p.Ala283Val Single submitter familial hemiplegic migraine ⚠
  • p.Ala318Glu Single submitter familial hemiplegic migraine ⚠
  • p.Ala643Gly Single submitter familial hemiplegic migraine ⚠
  • p.Arg1007Gln Single submitter familial hemiplegic migraine ⚠
  • p.Arg1007Trp Single submitter familial hemiplegic migraine ⚠
  • p.Arg1008Trp Single submitter developmental and epileptic encephalopathy ⚠
  • p.Arg279Gln Single submitter Inborn genetic diseases ⚠
  • p.Arg348Cys Single submitter familial hemiplegic migraine ⚠
  • p.Arg3His Single submitter familial hemiplegic migraine ⚠
  • p.Arg421Gln Single submitter alternating hemiplegia of childhood 1 ⚠
  • p.Arg51Cys Single submitter migraine, familial hemiplegic, 2 ⚠
  • p.Arg51His Single submitter familial hemiplegic migraine ⚠
  • p.Arg564Gln Single submitter fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies ⚠
  • p.Arg593Gln Single submitter ATP1A2-related disorder ⚠
  • p.Arg593Trp Single submitter ATP1A2-related disorder ⚠
  • p.Arg604Gln Single submitter familial hemiplegic migraine ⚠
  • p.Arg65Leu Single submitter developmental and epileptic encephalopathy 98 ⚠
  • p.Arg763His Single submitter familial hemiplegic migraine ⚠
  • p.Arg834Ter Single submitter familial hemiplegic migraine
  • p.Asn127= Single submitter familial hemiplegic migraine
  • p.Asn382= Single submitter migraine, familial hemiplegic, 2
  • p.Asn556Tyr Single submitter familial hemiplegic migraine ⚠
  • p.Asp470Glu Single submitter familial hemiplegic migraine ⚠
  • p.Asp528Asn Single submitter familial hemiplegic migraine ⚠
  • p.Asp718Asn Single submitter familial hemiplegic migraine ⚠
  • p.Cys209= Single submitter familial hemiplegic migraine
  • p.Cys915= Single submitter familial hemiplegic migraine
  • p.Gln532Glu Single submitter Inborn genetic diseases ⚠
  • p.Glu120= Single submitter Inborn genetic diseases
  • p.Glu492Lys Single submitter Inborn genetic diseases ⚠
  • p.Gly324Ser Single submitter developmental and epileptic encephalopathy 98 ⚠
  • p.Gly551Arg Single submitter fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies ⚠
  • p.Gly607= Single submitter Inborn genetic diseases
  • p.Gly762Ser Single submitter Inborn genetic diseases ⚠
  • p.Gly874= Single submitter familial hemiplegic migraine
  • p.Gly874Ser Single submitter familial hemiplegic migraine ⚠
  • p.His288Tyr Single submitter migraine, familial hemiplegic, 2 ⚠
  • p.Ile647Val Single submitter familial hemiplegic migraine ⚠
  • p.Ile729= Single submitter familial hemiplegic migraine
  • p.Ile804= Single submitter familial hemiplegic migraine
  • p.Ile854= Single submitter familial hemiplegic migraine
  • p.Leu102Pro Single submitter familial hemiplegic migraine ⚠
  • p.Lys567Arg Single submitter Inborn genetic diseases ⚠
  • p.Lys840= Single submitter familial hemiplegic migraine
  • p.Met829Thr Single submitter familial hemiplegic migraine ⚠
  • p.Phe95= Single submitter familial hemiplegic migraine
  • p.Pro526= Single submitter familial hemiplegic migraine
  • p.Pro558= Single submitter migraine, familial hemiplegic, 2
  • p.Pro979Arg Single submitter alternating hemiplegia of childhood 1 ⚠
  • p.Ser220Leu Single submitter familial hemiplegic migraine ⚠
  • p.Ser303= Single submitter familial hemiplegic migraine
  • p.Ser499Asn Single submitter Inborn genetic diseases ⚠
  • p.Ser672Leu Single submitter migraine, familial hemiplegic, 2 ⚠
  • p.Thr15= Single submitter migraine, familial hemiplegic, 2
  • p.Thr15Met Single submitter Inborn genetic diseases ⚠
  • p.Thr343Ile Single submitter familial hemiplegic migraine ⚠
  • p.Thr376Arg Single submitter familial hemiplegic migraine ⚠
  • p.Thr378Ile Single submitter hemiplegic migraine-developmental and epileptic encephalopathy spectrum ⚠
  • p.Thr517Asn Single submitter alternating hemiplegia of childhood 1 ⚠
  • p.Thr577Met Single submitter Inborn genetic diseases ⚠
  • p.Thr757= Single submitter familial hemiplegic migraine
  • p.Thr917= Single submitter Inborn genetic diseases
  • p.Thr959Met Single submitter familial hemiplegic migraine ⚠
  • p.Tyr851Cys Single submitter ⚠
  • p.Tyr991= Single submitter Inborn genetic diseases
  • p.Tyr9Asn Single submitter Inborn genetic diseases ⚠
  • p.Val191= Single submitter familial hemiplegic migraine
  • p.Val197Ile Single submitter familial hemiplegic migraine ⚠
  • p.Val330Met Single submitter Inborn genetic diseases ⚠
  • p.Val430Ile Single submitter familial hemiplegic migraine ⚠
  • p.Val69Ile Single submitter familial hemiplegic migraine ⚠
  • p.Val842= Single submitter familial hemiplegic migraine

Benign 95

  • c.1017+56G>A Multiple submitters alternating hemiplegia of childhood 1
  • c.12+205A>C Multiple submitters
  • c.12+292A>C Multiple submitters
  • c.13-11_13-8del Multiple submitters migraine, familial hemiplegic, 2
  • c.13-22T>C Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.1326+49dup Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.1651+49C>T Multiple submitters developmental and epileptic encephalopathy 98
  • c.177+95T>C Multiple submitters developmental and epileptic encephalopathy 98
  • c.2115+14C>T Multiple submitters developmental and epileptic encephalopathy 98
  • c.2284+18G>T Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.2709+26G>A Multiple submitters developmental and epileptic encephalopathy 98
  • c.2840+176C>T Multiple submitters
  • c.2841-20dup Multiple submitters developmental and epileptic encephalopathy 98
  • c.2943-27G>C Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.2943-47C>G Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.3034+14C>T Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.3034+61G>A Multiple submitters developmental and epileptic encephalopathy 98
  • c.382-41G>T Multiple submitters
  • c.382-85G>A Multiple submitters developmental and epileptic encephalopathy 98
  • c.495+65T>C Multiple submitters alternating hemiplegia of childhood 1
  • c.495+81T>A Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.495+96G>A Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.630+123T>C Multiple submitters
  • c.630+238A>G Multiple submitters
  • c.748+84T>A Multiple submitters alternating hemiplegia of childhood 1
  • c.749-27C>A Multiple submitters
  • c.-48C>G Multiple submitters developmental and epileptic encephalopathy 98
  • c.*1026A>G Multiple submitters developmental and epileptic encephalopathy 98
  • c.*1095T>A Multiple submitters developmental and epileptic encephalopathy 98
  • c.*1211C>A Multiple submitters migraine, familial hemiplegic, 2
  • c.*1280G>A Multiple submitters alternating hemiplegia of childhood 1
  • c.*1284C>T Multiple submitters migraine, familial hemiplegic, 2
  • c.*1547G>T Multiple submitters alternating hemiplegia of childhood 1
  • c.*1548C>T Multiple submitters alternating hemiplegia of childhood 1
  • c.*1629T>C Multiple submitters alternating hemiplegia of childhood 1
  • c.*1780G>A Multiple submitters migraine, familial hemiplegic, 2
  • c.*2259T>A Multiple submitters alternating hemiplegia of childhood 1
  • c.*253C>T Multiple submitters migraine, familial hemiplegic, 2
  • c.*546G>A Multiple submitters alternating hemiplegia of childhood 1
  • c.*589G>C Multiple submitters alternating hemiplegia of childhood 1
  • c.*682T>C Multiple submitters migraine, familial hemiplegic, 2
  • c.*686G>A Multiple submitters alternating hemiplegia of childhood 1
  • c.*703G>A Multiple submitters developmental and epileptic encephalopathy 98
  • c.*72G>A Multiple submitters developmental and epileptic encephalopathy 98
  • c.*746C>T Multiple submitters developmental and epileptic encephalopathy 98
  • c.*748C>T Multiple submitters developmental and epileptic encephalopathy 98
  • p.Ala753= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Cys660= Multiple submitters Inborn genetic diseases
  • p.Cys987= Multiple submitters Inborn genetic diseases
  • p.Lys43= Multiple submitters familial hemiplegic migraine
  • p.Ser373= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.1217-15dup Single submitter familial hemiplegic migraine
  • c.13-11T>C Single submitter
  • c.13-13del Single submitter
  • c.13-19C>T Single submitter familial hemiplegic migraine
  • c.13-237T>G Single submitter
  • c.1652-6del Single submitter familial hemiplegic migraine
  • c.177+305G>A Single submitter
  • c.1828-248CA[10] Single submitter
  • c.1828-248CA[11] Single submitter
  • c.1828-248CA[12] Single submitter
  • c.1828-248CA[8] Single submitter
  • c.1828-269CA[4] Single submitter
  • c.1828-300C>T Single submitter
  • c.1964+39A>C Single submitter
  • c.1965-214A>C Single submitter
  • c.2116-8C>G Single submitter familial hemiplegic migraine
  • c.2285-47G>A Single submitter
  • c.2285-86T>C Single submitter
  • c.2440-10C>T Single submitter familial hemiplegic migraine
  • c.2709+43C>T Single submitter
  • c.2841-243A>G Single submitter
  • c.2943-19T>A Single submitter familial hemiplegic migraine
  • c.3034+23dup Single submitter familial hemiplegic migraine
  • c.3035-143C>T Single submitter
  • c.3035-152A>G Single submitter
  • c.3035-168A>G Single submitter
  • c.3035-185A>G Single submitter
  • c.3035-196A>G Single submitter
  • c.3035-272C>T Single submitter
  • c.3035-277T>C Single submitter
  • c.631-282A>G Single submitter
  • c.748+21dup Single submitter familial hemiplegic migraine
  • c.748+246dup Single submitter
  • c.749-13del Single submitter familial hemiplegic migraine
  • c.-371A>T Single submitter
  • c.*1000T>G Single submitter alternating hemiplegia of childhood 1
  • c.*1212G>C Single submitter alternating hemiplegia of childhood 1
  • c.*1355C>T Single submitter migraine, familial hemiplegic, 2
  • c.*142A>G Single submitter alternating hemiplegia of childhood 1
  • c.*1781C>T Single submitter migraine, familial hemiplegic, 2
  • c.*482A>C Single submitter alternating hemiplegia of childhood 1
  • c.*621A>G Single submitter alternating hemiplegia of childhood 1
  • c.*86G>A Single submitter alternating hemiplegia of childhood 1
  • c.*9GAA[2] Single submitter

Benign/Likely benign 41

  • c.13-15_13-12del Multiple submitters familial hemiplegic migraine
  • c.1326+8del Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.1652-11C>G Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.1652-18C>A Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.1652-7C>A Multiple submitters developmental and epileptic encephalopathy 98
  • c.1652-7C>G Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.178-21C>T Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.2116-14C>T Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.2563+14C>T Multiple submitters familial hemiplegic migraine
  • c.2563+4C>T Multiple submitters developmental and epileptic encephalopathy 98
  • c.2564-8A>G Multiple submitters familial hemiplegic migraine
  • c.2709+11C>T Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.2943-15C>T Multiple submitters alternating hemiplegia of childhood 1
  • c.381+16C>T Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.631-16A>G Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • c.*15G>A Multiple submitters alternating hemiplegia of childhood 1
  • p.Ala429= Multiple submitters familial hemiplegic migraine
  • p.Ala710= Multiple submitters familial hemiplegic migraine
  • p.Arg196= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Asn472Ser Multiple submitters Inborn genetic diseases
  • p.Asp157= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Asp714= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Glu524= Multiple submitters developmental and epileptic encephalopathy 98
  • p.Gly114Ser Multiple submitters alternating hemiplegia of childhood 1 ⚠
  • p.Gly758Ala Multiple submitters familial hemiplegic migraine
  • p.His500= Multiple submitters familial hemiplegic migraine
  • p.Ile323= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Ile490= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Lys375= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Phe568= Multiple submitters developmental and epileptic encephalopathy 98
  • p.Phe989= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Pro82= Multiple submitters Inborn genetic diseases
  • p.Ser439= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Ser587= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Thr263= Multiple submitters Inborn genetic diseases
  • p.Thr376= Multiple submitters developmental and epileptic encephalopathy 98
  • p.Thr401= Multiple submitters Inborn genetic diseases
  • p.Thr838= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Thr959= Multiple submitters fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
  • p.Tyr113= Multiple submitters familial hemiplegic migraine
  • c.*1000T>A Single submitter migraine, familial hemiplegic, 2

Likely benign 505

Showing the top 300 by review status; the full set is in the sitemap.

  • c.1017+9G>T Multiple submitters familial hemiplegic migraine
  • c.1018-15_1018-13del Multiple submitters familial hemiplegic migraine
  • c.1018-5A>G Multiple submitters Inborn genetic diseases
  • c.1216+12C>T Multiple submitters familial hemiplegic migraine
  • c.1216+14C>G Multiple submitters familial hemiplegic migraine
  • c.1327-12C>G Multiple submitters familial hemiplegic migraine
  • c.1461+91G>C Multiple submitters
  • c.1652-6C>A Multiple submitters familial hemiplegic migraine
  • c.1652-8C>A Multiple submitters familial hemiplegic migraine
  • c.178-20G>A Multiple submitters familial hemiplegic migraine
  • c.178-79G>A Multiple submitters
  • c.1964+14A>G Multiple submitters familial hemiplegic migraine
  • c.2115+15G>A Multiple submitters familial hemiplegic migraine
  • c.2115+19G>A Multiple submitters familial hemiplegic migraine
  • c.2284+8G>C Multiple submitters familial hemiplegic migraine
  • c.2439+13G>A Multiple submitters familial hemiplegic migraine
  • c.2440-14C>T Multiple submitters familial hemiplegic migraine
  • c.2709+13G>A Multiple submitters familial hemiplegic migraine
  • c.2709+16T>A Multiple submitters familial hemiplegic migraine
  • c.2709+17A>G Multiple submitters familial hemiplegic migraine
  • c.2710-19C>G Multiple submitters familial hemiplegic migraine
  • c.2840+36G>A Multiple submitters
  • c.2942+11C>G Multiple submitters familial hemiplegic migraine
  • c.2942+16G>A Multiple submitters familial hemiplegic migraine
  • c.2942+19C>T Multiple submitters familial hemiplegic migraine
  • c.2943-75C>G Multiple submitters
  • c.3035-119A>G Multiple submitters
  • c.381+12C>T Multiple submitters familial hemiplegic migraine
  • c.381+13G>A Multiple submitters familial hemiplegic migraine
  • c.381+13G>T Multiple submitters familial hemiplegic migraine
  • c.495+9G>T Multiple submitters familial hemiplegic migraine
  • c.496-15T>C Multiple submitters familial hemiplegic migraine
  • p.Ala361= Multiple submitters familial hemiplegic migraine
  • p.Ala743= Multiple submitters familial hemiplegic migraine
  • p.Arg171= Multiple submitters familial hemiplegic migraine
  • p.Arg428= Multiple submitters Inborn genetic diseases
  • p.Arg593= Multiple submitters familial hemiplegic migraine
  • p.Arg644= Multiple submitters familial hemiplegic migraine
  • p.Arg65= Multiple submitters familial hemiplegic migraine
  • p.Arg879Gln Multiple submitters familial hemiplegic migraine
  • p.Arg890= Multiple submitters familial hemiplegic migraine
  • p.Asn329= Multiple submitters familial hemiplegic migraine
  • p.Asn358= Multiple submitters familial hemiplegic migraine
  • p.Asn653= Multiple submitters familial hemiplegic migraine
  • p.Asn717= Multiple submitters familial hemiplegic migraine
  • p.Asp444= Multiple submitters familial hemiplegic migraine
  • p.Asp737= Multiple submitters familial hemiplegic migraine
  • p.Asp930= Multiple submitters familial hemiplegic migraine
  • p.Gln177= Multiple submitters familial hemiplegic migraine
  • p.Gln394= Multiple submitters familial hemiplegic migraine
  • p.Glu36= Multiple submitters familial hemiplegic migraine
  • p.Glu530= Multiple submitters familial hemiplegic migraine
  • p.Gly627= Multiple submitters Inborn genetic diseases
  • p.Gly97= Multiple submitters familial hemiplegic migraine
  • p.Gly972= Multiple submitters familial hemiplegic migraine
  • p.His491= Multiple submitters familial hemiplegic migraine
  • p.His663= Multiple submitters familial hemiplegic migraine
  • p.Ile525= Multiple submitters familial hemiplegic migraine
  • p.Ile923= Multiple submitters familial hemiplegic migraine
  • p.Leu235= Multiple submitters familial hemiplegic migraine
  • p.Leu271= Multiple submitters familial hemiplegic migraine
  • p.Leu696= Multiple submitters familial hemiplegic migraine
  • p.Leu809= Multiple submitters familial hemiplegic migraine
  • p.Leu885= Multiple submitters familial hemiplegic migraine
  • p.Leu895= Multiple submitters Inborn genetic diseases
  • p.Leu965= Multiple submitters familial hemiplegic migraine
  • p.Lys347= Multiple submitters familial hemiplegic migraine
  • p.Lys456= Multiple submitters Inborn genetic diseases
  • p.Lys579Glu Multiple submitters Inborn genetic diseases
  • p.Phe305= Multiple submitters familial hemiplegic migraine
  • p.Phe575= Multiple submitters familial hemiplegic migraine
  • p.Pro227= Multiple submitters familial hemiplegic migraine
  • p.Pro654= Multiple submitters familial hemiplegic migraine
  • p.Ser496= Multiple submitters familial hemiplegic migraine
  • p.Ser605= Multiple submitters familial hemiplegic migraine
  • p.Ser672= Multiple submitters Inborn genetic diseases
  • p.Thr370= Multiple submitters familial hemiplegic migraine
  • p.Thr385= Multiple submitters familial hemiplegic migraine
  • p.Thr417= Multiple submitters familial hemiplegic migraine
  • p.Thr570= Multiple submitters familial hemiplegic migraine
  • p.Thr614= Multiple submitters familial hemiplegic migraine
  • p.Thr637= Multiple submitters Inborn genetic diseases
  • p.Thr690= Multiple submitters Inborn genetic diseases
  • p.Thr712= Multiple submitters Inborn genetic diseases
  • p.Thr801= Multiple submitters familial hemiplegic migraine
  • p.Tyr851= Multiple submitters familial hemiplegic migraine
  • p.Val296= Multiple submitters familial hemiplegic migraine
  • p.Val386= Multiple submitters familial hemiplegic migraine
  • p.Val501Met Multiple submitters alternating hemiplegia of childhood 1
  • p.Val759= Multiple submitters familial hemiplegic migraine
  • c.1017+10T>C Single submitter familial hemiplegic migraine
  • c.1017+10T>G Single submitter familial hemiplegic migraine
  • c.1017+15C>T Single submitter familial hemiplegic migraine
  • c.1017+20G>T Single submitter familial hemiplegic migraine
  • c.1017+7G>A Single submitter familial hemiplegic migraine
  • c.1018-11T>G Single submitter familial hemiplegic migraine
  • c.1018-12T>C Single submitter familial hemiplegic migraine
  • c.1018-15C>T Single submitter familial hemiplegic migraine
  • c.1018-19T>C Single submitter familial hemiplegic migraine
  • c.1018-4C>T Single submitter familial hemiplegic migraine
  • c.117+19C>T Single submitter familial hemiplegic migraine
  • c.117+83G>A Single submitter
  • c.118-11C>A Single submitter familial hemiplegic migraine
  • c.118-16A>T Single submitter familial hemiplegic migraine
  • c.118-18T>C Single submitter familial hemiplegic migraine
  • c.118-19C>T Single submitter familial hemiplegic migraine
  • c.12+10C>T Single submitter familial hemiplegic migraine
  • c.12+11C>T Single submitter familial hemiplegic migraine
  • c.12+12T>A Single submitter familial hemiplegic migraine
  • c.12+12T>G Single submitter familial hemiplegic migraine
  • c.12+16del Single submitter familial hemiplegic migraine
  • c.12+80G>T Single submitter
  • c.12+9C>T Single submitter familial hemiplegic migraine
  • c.1216+13T>C Single submitter familial hemiplegic migraine
  • c.1216+14C>T Single submitter familial hemiplegic migraine
  • c.1216+18A>G Single submitter familial hemiplegic migraine
  • c.1216+20G>A Single submitter familial hemiplegic migraine
  • c.1216+48G>A Single submitter
  • c.1216+7G>T Single submitter familial hemiplegic migraine
  • c.1216+8G>A Single submitter familial hemiplegic migraine
  • c.1216+8G>T Single submitter familial hemiplegic migraine
  • c.1216+9G>C Single submitter familial hemiplegic migraine
  • c.1217-12_1217-5del Single submitter familial hemiplegic migraine
  • c.1217-16C>T Single submitter familial hemiplegic migraine
  • c.1217-18C>A Single submitter familial hemiplegic migraine
  • c.1217-18C>T Single submitter
  • c.1217-4C>T Single submitter familial hemiplegic migraine
  • c.1217-8C>T Single submitter familial hemiplegic migraine
  • c.1217-9T>C Single submitter familial hemiplegic migraine
  • c.13-11T>G Single submitter familial hemiplegic migraine
  • c.13-20G>A Single submitter familial hemiplegic migraine
  • c.13-20G>C Single submitter familial hemiplegic migraine
  • c.13-4T>A Single submitter familial hemiplegic migraine
  • c.13-4T>G Single submitter familial hemiplegic migraine
  • c.13-5C>T Single submitter familial hemiplegic migraine
  • c.13-6C>A Single submitter familial hemiplegic migraine
  • c.13-8T>A Single submitter familial hemiplegic migraine
  • c.13-9C>T Single submitter
  • c.1326+13G>A Single submitter familial hemiplegic migraine
  • c.1326+14AC[5] Single submitter familial hemiplegic migraine
  • c.1326+15C>A Single submitter familial hemiplegic migraine
  • c.1326+15C>T Single submitter familial hemiplegic migraine
  • c.1326+19C>G Single submitter familial hemiplegic migraine
  • c.1326+7G>A Single submitter familial hemiplegic migraine
  • c.1326+8G>T Single submitter familial hemiplegic migraine
  • c.1327-11T>A Single submitter familial hemiplegic migraine
  • c.1327-14G>A Single submitter familial hemiplegic migraine
  • c.1327-14G>T Single submitter familial hemiplegic migraine
  • c.1327-19T>C Single submitter familial hemiplegic migraine
  • c.1327-6T>C Single submitter familial hemiplegic migraine
  • c.1461+10G>A Single submitter familial hemiplegic migraine
  • c.1461+11G>T Single submitter familial hemiplegic migraine
  • c.1461+15C>T Single submitter familial hemiplegic migraine
  • c.1461+19G>A Single submitter familial hemiplegic migraine
  • c.1461+9G>C Single submitter familial hemiplegic migraine
  • c.1462-10G>C Single submitter familial hemiplegic migraine
  • c.1462-13G>A Single submitter familial hemiplegic migraine
  • c.1462-15C>G Single submitter familial hemiplegic migraine
  • c.1462-17A>G Single submitter familial hemiplegic migraine
  • c.1462-5T>A Single submitter
  • c.1651+18G>T Single submitter familial hemiplegic migraine
  • c.1651+7G>A Single submitter familial hemiplegic migraine
  • c.1652-17C>T Single submitter familial hemiplegic migraine
  • c.1652-19C>T Single submitter familial hemiplegic migraine
  • c.1652-6C>G Single submitter familial hemiplegic migraine
  • c.1652-6C>T Single submitter
  • c.1652-8C>G Single submitter familial hemiplegic migraine
  • c.177+14_177+22del Single submitter familial hemiplegic migraine
  • c.177+14C>T Single submitter familial hemiplegic migraine
  • c.177+17C>T Single submitter familial hemiplegic migraine
  • c.177+20G>C Single submitter
  • c.177+21G>C Single submitter
  • c.178-14C>T Single submitter familial hemiplegic migraine
  • c.178-16C>G Single submitter familial hemiplegic migraine
  • c.178-16C>T Single submitter familial hemiplegic migraine
  • c.178-7C>A Single submitter familial hemiplegic migraine
  • c.1827+10del Single submitter familial hemiplegic migraine
  • c.1827+134A>G Single submitter
  • c.1827+17C>T Single submitter familial hemiplegic migraine
  • c.1827+19C>T Single submitter familial hemiplegic migraine
  • c.1827+38C>T Single submitter
  • c.1827+8C>A Single submitter familial hemiplegic migraine
  • c.1827+8C>T Single submitter familial hemiplegic migraine
  • c.1828-12C>T Single submitter familial hemiplegic migraine
  • c.1828-13T>G Single submitter familial hemiplegic migraine
  • c.1964+12del Single submitter familial hemiplegic migraine
  • c.1964+13C>A Single submitter familial hemiplegic migraine
  • c.1964+15G>A Single submitter familial hemiplegic migraine
  • c.1964+16G>A Single submitter familial hemiplegic migraine
  • c.1964+18A>G Single submitter familial hemiplegic migraine
  • c.1965-11C>T Single submitter familial hemiplegic migraine
  • c.1965-12C>T Single submitter familial hemiplegic migraine
  • c.1965-130G>T Single submitter
  • c.1965-14C>A Single submitter familial hemiplegic migraine
  • c.1965-15C>T Single submitter familial hemiplegic migraine
  • c.1965-189T>C Single submitter
  • c.1965-36_1965-12del Single submitter familial hemiplegic migraine
  • c.1965-6C>A Single submitter familial hemiplegic migraine
  • c.1965-7C>A Single submitter familial hemiplegic migraine
  • c.1965-9A>T Single submitter familial hemiplegic migraine
  • c.2115+17G>A Single submitter familial hemiplegic migraine
  • c.2116-12T>C Single submitter familial hemiplegic migraine
  • c.2116-13G>A Single submitter familial hemiplegic migraine
  • c.2116-13G>C Single submitter familial hemiplegic migraine
  • c.2116-14C>G Single submitter familial hemiplegic migraine
  • c.2116-16G>T Single submitter familial hemiplegic migraine
  • c.2116-17G>T Single submitter familial hemiplegic migraine
  • c.2116-18T>C Single submitter familial hemiplegic migraine
  • c.2116-20T>C Single submitter familial hemiplegic migraine
  • c.2116-4C>T Single submitter familial hemiplegic migraine
  • c.2116-7C>A Single submitter familial hemiplegic migraine
  • c.2284+12G>A Single submitter familial hemiplegic migraine
  • c.2284+15T>C Single submitter familial hemiplegic migraine
  • c.2284+17G>C Single submitter familial hemiplegic migraine
  • c.2284+9G>C Single submitter familial hemiplegic migraine
  • c.2285-20C>T Single submitter familial hemiplegic migraine
  • c.2439+11G>A Single submitter familial hemiplegic migraine
  • c.2439+14G>A Single submitter familial hemiplegic migraine
  • c.2439+7G>A Single submitter familial hemiplegic migraine
  • c.2440-26C>T Single submitter
  • c.2440-27_2440-16del Single submitter familial hemiplegic migraine
  • c.2440-6A>C Single submitter familial hemiplegic migraine
  • c.2440-7C>G Single submitter familial hemiplegic migraine
  • c.2563+17G>A Single submitter
  • c.2563+7C>A Single submitter familial hemiplegic migraine
  • c.2563+9A>G Single submitter familial hemiplegic migraine
  • c.2564-10C>T Single submitter familial hemiplegic migraine
  • c.2564-12C>T Single submitter familial hemiplegic migraine
  • c.2564-5C>T Single submitter familial hemiplegic migraine
  • c.2709+89del Single submitter
  • c.2710-10C>T Single submitter familial hemiplegic migraine
  • c.2710-12C>A Single submitter familial hemiplegic migraine
  • c.2710-12C>T Single submitter familial hemiplegic migraine
  • c.2710-15_2710-14del Single submitter familial hemiplegic migraine
  • c.2710-16C>T Single submitter familial hemiplegic migraine
  • c.2840+10C>T Single submitter familial hemiplegic migraine
  • c.2840+10del Single submitter familial hemiplegic migraine
  • c.2840+12C>A Single submitter familial hemiplegic migraine
  • c.2840+14C>T Single submitter familial hemiplegic migraine
  • c.2840+17A>G Single submitter familial hemiplegic migraine
  • c.2840+7G>T Single submitter familial hemiplegic migraine
  • c.2841-17C>T Single submitter
  • c.2841-18C>G Single submitter familial hemiplegic migraine
  • c.2841-20C>T Single submitter familial hemiplegic migraine
  • c.2841-4T>C Single submitter familial hemiplegic migraine
  • c.2841-7C>T Single submitter
  • c.2841-8C>T Single submitter familial hemiplegic migraine
  • c.2942+12_2942+15del Single submitter familial hemiplegic migraine
  • c.2942+15C>G Single submitter familial hemiplegic migraine
  • c.2942+15C>T Single submitter familial hemiplegic migraine
  • c.2942+16G>C Single submitter familial hemiplegic migraine
  • c.2942+19C>A Single submitter familial hemiplegic migraine
  • c.2942+20G>A Single submitter familial hemiplegic migraine
  • c.2942+9C>T Single submitter familial hemiplegic migraine
  • c.2943-11A>G Single submitter familial hemiplegic migraine
  • c.2943-11A>T Single submitter familial hemiplegic migraine
  • c.2943-18C>G Single submitter familial hemiplegic migraine
  • c.3034+13A>G Single submitter familial hemiplegic migraine
  • c.3034+16T>C Single submitter familial hemiplegic migraine
  • c.3034+17T>G Single submitter familial hemiplegic migraine
  • c.3034+18C>T Single submitter familial hemiplegic migraine
  • c.3034+20_3034+23del Single submitter familial hemiplegic migraine
  • c.3034+275C>T Single submitter
  • c.3035-284A>T Single submitter
  • c.3035-286G>A Single submitter
  • c.3035-9C>T Single submitter familial hemiplegic migraine
  • c.381+13G>C Single submitter familial hemiplegic migraine
  • c.381+19C>A Single submitter familial hemiplegic migraine
  • c.381+19C>G Single submitter familial hemiplegic migraine
  • c.382-12del Single submitter familial hemiplegic migraine
  • c.382-17C>T Single submitter familial hemiplegic migraine
  • c.495+10C>G Single submitter familial hemiplegic migraine
  • c.495+10dup Single submitter familial hemiplegic migraine
  • c.495+11A>C Single submitter familial hemiplegic migraine
  • c.495+14G>A Single submitter familial hemiplegic migraine
  • c.495+17G>A Single submitter familial hemiplegic migraine
  • c.495+18G>C Single submitter familial hemiplegic migraine
  • c.495+7T>C Single submitter familial hemiplegic migraine
  • c.495+7T>G Single submitter familial hemiplegic migraine
  • c.496-11G>T Single submitter familial hemiplegic migraine
  • c.496-14G>A Single submitter familial hemiplegic migraine
  • c.496-14G>T Single submitter familial hemiplegic migraine
  • c.496-5C>G Single submitter familial hemiplegic migraine
  • c.630+8G>A Single submitter familial hemiplegic migraine
  • c.631-14T>G Single submitter familial hemiplegic migraine
  • c.631-16A>T Single submitter familial hemiplegic migraine
  • c.631-17C>A Single submitter familial hemiplegic migraine
  • c.631-17C>T Single submitter familial hemiplegic migraine
  • c.631-18G>A Single submitter familial hemiplegic migraine
  • c.631-231T>G Single submitter
  • c.631-9C>T Single submitter familial hemiplegic migraine
  • c.748+16G>T Single submitter familial hemiplegic migraine
  • c.748+18C>T Single submitter familial hemiplegic migraine
  • c.749-16C>A Single submitter familial hemiplegic migraine
  • c.749-16C>T Single submitter familial hemiplegic migraine
  • c.749-20G>T Single submitter familial hemiplegic migraine
  • c.749-210A>G Single submitter
  • c.749-4G>A Single submitter familial hemiplegic migraine
  • c.-14C>G Single submitter
  • c.-30G>A Single submitter

Uncertain significance 678

Showing the top 300 by review status; the full set is in the sitemap.