AVPR2 — 382 ClinVar variants

All ClinVar germline AVPR2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 122 flagged for review →

57 Pathogenic · 12 Pathogenic/Likely pathogenic · 36 Likely pathogenic · 19 Conflicting · 24 Benign · 13 Benign/Likely benign · 124 Likely benign · 97 Uncertain significance

Full AVPR2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 122

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 4

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 54

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 58

The independent predictors disagree with each other — read with care.

All AVPR2 variants

Pathogenic 57

Pathogenic/Likely pathogenic 12

  • p.Arg158fs Multiple submitters nephrogenic diabetes insipidus
  • p.Arg202Cys Multiple submitters Renal tubulopathies ⚠
  • p.Gly185fs Multiple submitters nephrogenic diabetes insipidus
  • p.Leu44Phe Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Phe328fs Multiple submitters
  • p.Pro322Leu Multiple submitters nephrogenic diabetes insipidus
  • p.Ser167Leu Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Ser171Arg Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Tyr128del Multiple submitters Inborn genetic diseases
  • p.Tyr128Ser Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Tyr205Cys Multiple submitters AVPR2-related disorder
  • p.Val279del Multiple submitters diabetes insipidus, nephrogenic, X-linked

Likely pathogenic 36

  • p.Arg104Cys Multiple submitters diabetes insipidus, nephrogenic, X-linked ⚠
  • p.Arg251fs Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Gly107Glu Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Gly257fs Multiple submitters nephrogenic diabetes insipidus
  • p.Ala285Pro Single submitter nephrogenic diabetes insipidus
  • p.Arg137Gly Single submitter nephrogenic diabetes insipidus
  • p.Arg203Cys Single submitter diabetes insipidus, nephrogenic, X-linked ⚠
  • p.Asn321Lys Single submitter nephrogenic diabetes insipidus
  • p.Cys142fs Single submitter nephrogenic diabetes insipidus
  • p.Gln174Glu Single submitter diabetes insipidus, nephrogenic, X-linked ⚠
  • p.Gln174His Single submitter diabetes insipidus, nephrogenic, X-linked
  • p.Gln225Ter Single submitter nephrogenic diabetes insipidus
  • p.Gly201Cys Single submitter nephrogenic diabetes insipidus
  • p.Gly220fs Single submitter
  • p.Gly69fs Single submitter diabetes insipidus, nephrogenic, X-linked
  • p.Ile177Asn Single submitter diabetes insipidus, nephrogenic, X-linked
  • p.Leu274del Single submitter nephrogenic diabetes insipidus
  • p.Leu59Pro Single submitter nephrogenic diabetes insipidus
  • p.Leu62Pro Single submitter nephrogenic syndrome of inappropriate antidiuresis
  • p.Leu81Phe Single submitter
  • p.Leu97Pro Single submitter nephrogenic diabetes insipidus
  • p.Met272fs Single submitter nephrogenic syndrome of inappropriate antidiuresis
  • p.Met272Ile Single submitter diabetes insipidus, nephrogenic, X-linked
  • p.Phe229Val Single submitter diabetes insipidus, nephrogenic, X-linked ⚠
  • p.Pro159fs Single submitter diabetes insipidus, nephrogenic, X-linked
  • p.Pro286Leu Single submitter Inborn genetic diseases
  • p.Pro322Thr Single submitter nephrogenic diabetes insipidus
  • p.Ser327fs Single submitter diabetes insipidus, nephrogenic, X-linked
  • p.Thr273Met Single submitter diabetes insipidus, nephrogenic, X-linked
  • p.Trp193fs Single submitter AVPR2-related disorder
  • p.Trp323Arg Single submitter
  • p.Trp99Arg Single submitter
  • p.Val332fs Single submitter diabetes insipidus, nephrogenic, X-linked
  • p.Ala154fs No assertion criteria AVPR2-related disorder
  • p.Cys112Phe No assertion criteria diabetes insipidus, nephrogenic, X-linked
  • p.Met272Val No assertion criteria diabetes insipidus, nephrogenic, X-linked

Conflicting classifications of pathogenicity 19

Benign 24

  • c.25+118A>G Multiple submitters
  • p.Ala147Val Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Ala42Val Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Ala60= Multiple submitters
  • p.Arg106His Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Arg139His Multiple submitters diabetes insipidus, nephrogenic, X-linked ⚠
  • p.Asn182= Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Gly12Glu Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Leu309= Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Leu339= Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Ser331= Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Thr7Ser Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Val215Met Multiple submitters diabetes insipidus, nephrogenic, X-linked ⚠
  • p.Val58= Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • c.-153_-152insC Single submitter
  • c.*204C>T Single submitter diabetes insipidus, nephrogenic, X-linked
  • c.*257G>A Single submitter diabetes insipidus, nephrogenic, X-linked
  • c.*320G>A Single submitter diabetes insipidus, nephrogenic, X-linked
  • c.*326A>C Single submitter diabetes insipidus, nephrogenic, X-linked
  • p.Ala294= Single submitter
  • p.Arg104His Single submitter diabetes insipidus, nephrogenic, X-linked
  • p.Arg68Gln Single submitter ⚠
  • p.Gly250Glu Single submitter ⚠
  • p.Pro256= Single submitter

Benign/Likely benign 13

  • c.26-6T>G Multiple submitters nephrogenic syndrome of inappropriate antidiuresis
  • p.Ala147= Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Ala223Thr Multiple submitters Inborn genetic diseases
  • p.Ala39= Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Ala4= Multiple submitters nephrogenic syndrome of inappropriate antidiuresis
  • p.Ala42= Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Ala63= Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Arg247His Multiple submitters diabetes insipidus, nephrogenic, X-linked ⚠
  • p.Arg252Trp Multiple submitters diabetes insipidus, nephrogenic, X-linked ⚠
  • p.Gly257Ser Multiple submitters Inborn genetic diseases
  • p.Gly352Asp Multiple submitters Inborn genetic diseases
  • p.Leu35= Multiple submitters diabetes insipidus, nephrogenic, X-linked
  • p.Ser371= Multiple submitters nephrogenic syndrome of inappropriate antidiuresis

Likely benign 124

Uncertain significance 97