BEST1 — 926 ClinVar variants

All ClinVar germline BEST1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 354 flagged for review →

138 Pathogenic · 81 Pathogenic/Likely pathogenic · 106 Likely pathogenic · 49 Conflicting · 53 Benign · 6 Benign/Likely benign · 184 Likely benign · 309 Uncertain significance

Full BEST1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 354

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 38

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 22

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 177

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 177

Predictors split 117

The independent predictors disagree with each other — read with care.

All BEST1 variants

Pathogenic 138

Pathogenic/Likely pathogenic 81

  • c.1100+1_1100+10del Multiple submitters inherited retinal dystrophy
  • c.1100+1G>C Multiple submitters
  • c.247+2del Multiple submitters isolated macular dystrophy
  • c.867+97G>A Multiple submitters autosomal recessive bestrophinopathy
  • p.Ala146Lys Multiple submitters vitelliform macular dystrophy 2
  • p.Ala195Val Multiple submitters BEST1-related dominant retinopathy ⚠
  • p.Ala243Val Multiple submitters Autosomal dominant BEST1-related disorders
  • p.Arg105Ser Multiple submitters autosomal recessive bestrophinopathy
  • p.Arg130Ser Multiple submitters autosomal recessive bestrophinopathy
  • p.Arg13Cys Multiple submitters Macular dystrophy ⚠
  • p.Arg13Gly Multiple submitters isolated macular dystrophy ⚠
  • p.Arg13His Multiple submitters inherited retinal dystrophy ⚠
  • p.Arg141His Multiple submitters BEST1-related dominant retinopathy ⚠
  • p.Arg141Ser Multiple submitters inherited retinal dystrophy
  • p.Arg202Trp Multiple submitters inherited retinal dystrophy ⚠
  • p.Arg218Cys Multiple submitters autosomal dominant vitreoretinochoroidopathy
  • p.Arg218His Multiple submitters inherited retinal dystrophy ⚠
  • p.Arg255Trp Multiple submitters vitelliform macular dystrophy 2
  • p.Arg25Gln Multiple submitters inherited retinal dystrophy ⚠
  • p.Arg25Trp Multiple submitters inherited retinal dystrophy
  • p.Arg47Cys Multiple submitters ⚠
  • p.Arg47His Multiple submitters autosomal dominant vitreoretinochoroidopathy ⚠
  • p.Arg92Ser Multiple submitters inherited retinal dystrophy
  • p.Asp312Asn Multiple submitters inherited retinal dystrophy
  • p.Gln170Ter Multiple submitters vitelliform macular dystrophy 2
  • p.Gln220Ter Multiple submitters autosomal recessive bestrophinopathy
  • p.Gln238Arg Multiple submitters inherited retinal dystrophy
  • p.Gln238fs Multiple submitters vitelliform macular dystrophy 2
  • p.Gln293His Multiple submitters BEST1-related disorder
  • p.Gln96Glu Multiple submitters inherited retinal dystrophy
  • p.Glu213Gly Multiple submitters autosomal recessive bestrophinopathy
  • p.Glu292Lys Multiple submitters inherited retinal dystrophy
  • p.Glu35Lys Multiple submitters inherited retinal dystrophy
  • p.Glu482fs Multiple submitters severe early-childhood-onset retinal dystrophy
  • p.Glu518Ter Multiple submitters vitelliform macular dystrophy 2
  • p.Gly15Asp Multiple submitters inherited retinal dystrophy
  • p.Gly222Val Multiple submitters vitelliform macular dystrophy 2
  • p.Gly34= Multiple submitters inherited retinal dystrophy
  • p.His526delinsProTer Multiple submitters Stargardt disease
  • p.Ile201Thr Multiple submitters BEST1-related disorder
  • p.Ile295del Multiple submitters inherited retinal dystrophy
  • p.Ile295Thr Multiple submitters inherited retinal dystrophy
  • p.Ile295Val Multiple submitters ⚠
  • p.Ile310Thr Multiple submitters inherited retinal dystrophy
  • p.Leu134Val Multiple submitters inherited retinal dystrophy ⚠
  • p.Leu21Arg Multiple submitters inherited retinal dystrophy
  • p.Leu21Val Multiple submitters vitelliform macular dystrophy 2
  • p.Leu32Pro Multiple submitters Stargardt disease
  • p.Leu41Pro Multiple submitters inherited retinal dystrophy ⚠
  • p.Leu472fs Multiple submitters autosomal dominant vitreoretinochoroidopathy
  • p.Lys30Arg Multiple submitters inherited retinal dystrophy ⚠
  • p.Phe298Ser Multiple submitters inherited retinal dystrophy
  • p.Phe305Leu Multiple submitters vitelliform macular dystrophy 2
  • p.Phe305Ser Multiple submitters inherited retinal dystrophy
  • p.Pro101Leu Multiple submitters vitelliform macular dystrophy 2
  • p.Pro152Ser Multiple submitters autosomal recessive bestrophinopathy
  • p.Pro274Arg Multiple submitters retinal disorder
  • p.Pro297Ser Multiple submitters BEST1-related dominant retinopathy
  • p.Ser142_Val143insSer Multiple submitters BEST1-related disorder
  • p.Ser144Asn Multiple submitters inherited retinal dystrophy
  • p.Ser27Gly Multiple submitters vitelliform macular dystrophy 2
  • p.Ser517Ter Multiple submitters inherited retinal dystrophy
  • p.Thr237Ser Multiple submitters vitelliform macular dystrophy 2
  • p.Thr241Asn Multiple submitters inherited retinal dystrophy
  • p.Thr277Met Multiple submitters inherited retinal dystrophy
  • p.Thr2Ser Multiple submitters inherited retinal dystrophy
  • p.Thr307Asn Multiple submitters inherited retinal dystrophy ⚠
  • p.Thr307Ile Multiple submitters inherited retinal dystrophy ⚠
  • p.Thr4Ile Multiple submitters Macular dystrophy
  • p.Thr6Ala Multiple submitters inherited retinal dystrophy ⚠
  • p.Thr6Arg Multiple submitters inherited retinal dystrophy
  • p.Thr6Lys Multiple submitters inherited retinal dystrophy
  • p.Trp24Cys Multiple submitters inherited retinal dystrophy
  • p.Trp24Ter Multiple submitters inherited retinal dystrophy
  • p.Trp309Arg Multiple submitters inherited retinal dystrophy
  • p.Trp93Arg Multiple submitters inherited retinal dystrophy
  • p.Tyr227Cys Multiple submitters vitelliform macular dystrophy 2 ⚠
  • p.Val311Gly Multiple submitters inherited retinal dystrophy
  • p.Val505fs Multiple submitters inherited retinal dystrophy
  • p.Val81Met Multiple submitters inherited retinal dystrophy
  • p.Val9Leu Multiple submitters inherited retinal dystrophy

Likely pathogenic 106

Conflicting classifications of pathogenicity 49

Benign 53

Benign/Likely benign 6

Likely benign 184

Uncertain significance 309

Showing the top 300 by review status; the full set is in the sitemap.