BMP1 — 1017 ClinVar variants

All ClinVar germline BMP1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 271 flagged for review →

27 Pathogenic · 3 Pathogenic/Likely pathogenic · 19 Likely pathogenic · 28 Conflicting · 63 Benign · 13 Benign/Likely benign · 579 Likely benign · 285 Uncertain significance

Full BMP1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 271

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 5

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 139

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 126

The independent predictors disagree with each other — read with care.

All BMP1 variants

Pathogenic 27

Pathogenic/Likely pathogenic 3

Likely pathogenic 19

Conflicting classifications of pathogenicity 28

  • c.1766-4G>A Single submitter
  • c.1927-13G>A Single submitter osteogenesis imperfecta type 13
  • c.2575+12G>A Single submitter osteogenesis imperfecta type 13
  • c.837-5T>C Single submitter osteogenesis imperfecta type 13
  • c.962-18C>G Single submitter osteogenesis imperfecta type 13
  • p.Ala541= Single submitter osteogenesis imperfecta type 13
  • p.Ala813Thr Single submitter Inborn genetic diseases ⚠
  • p.Ala857Thr Single submitter Inborn genetic diseases ⚠
  • p.Arg721Ter Single submitter
  • p.Arg80His Single submitter Inborn genetic diseases ⚠
  • p.Cys348= Single submitter osteogenesis imperfecta type 13
  • p.Cys917= Single submitter osteogenesis imperfecta type 13
  • p.Glu239= Single submitter osteogenesis imperfecta
  • p.Glu910= Single submitter osteogenesis imperfecta
  • p.Gly712Ser Single submitter osteogenesis imperfecta type 13 ⚠
  • p.His472= Single submitter osteogenesis imperfecta
  • p.Ile602Val Single submitter osteogenesis imperfecta type 13 ⚠
  • p.Phe722= Single submitter osteogenesis imperfecta type 13
  • p.Phe808= Single submitter osteogenesis imperfecta type 13
  • p.Pro829= Single submitter osteogenesis imperfecta
  • p.Thr365= Single submitter osteogenesis imperfecta
  • p.Thr915= Single submitter
  • p.Tyr646= Single submitter osteogenesis imperfecta type 13
  • p.Tyr802= Single submitter osteogenesis imperfecta type 13
  • p.Tyr900= Single submitter osteogenesis imperfecta type 13
  • p.Val134= Single submitter osteogenesis imperfecta type 13
  • p.Val68= Single submitter osteogenesis imperfecta type 13
  • p.Val830Ile Single submitter Inborn genetic diseases ⚠

Benign 63

Benign/Likely benign 13

  • c.1180+5C>T Multiple submitters
  • c.2234-12G>A Multiple submitters osteogenesis imperfecta type 13
  • c.2234-16A>C Multiple submitters
  • c.2234-20C>T Multiple submitters osteogenesis imperfecta type 13
  • c.2827-4C>T Multiple submitters
  • c.433+12A>G Multiple submitters osteogenesis imperfecta type 13
  • c.-15C>G Multiple submitters osteogenesis imperfecta type 13
  • c.*145T>C Multiple submitters osteogenesis imperfecta type 13
  • c.*22G>A Multiple submitters osteogenesis imperfecta type 13
  • p.Ala390= Multiple submitters
  • p.Arg314His Multiple submitters osteogenesis imperfecta type 13 ⚠
  • p.Arg371His Multiple submitters osteogenesis imperfecta type 13 ⚠
  • p.Cys718= Multiple submitters osteogenesis imperfecta type 13

Likely benign 579

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 285