BMP15 — 79 ClinVar variants
All ClinVar germline BMP15 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 58 flagged for review →
8 Pathogenic · 4 Likely pathogenic · 3 Conflicting · 9 Benign · 4 Benign/Likely benign · 7 Likely benign · 44 Uncertain significance
Full BMP15 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 58
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 6
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
-
BMP15 p.Arg138His
Pathogenic
Single submitter
ovarian dysgenesis 2
-
BMP15 p.Arg206His
Pathogenic
Single submitter
ovarian dysgenesis 2
-
BMP15 p.Ile243Val
Pathogenic
Single submitter
ovarian dysgenesis 2
-
BMP15 p.Trp221Arg
Pathogenic
Single submitter
ovarian dysgenesis 2
-
BMP15 p.His307Tyr
Likely pathogenic
No assertion criteria
Genetic non-acquired premature ovarian failure
-
BMP15 p.Met70Leu
Likely pathogenic
No assertion criteria
Genetic non-acquired premature ovarian failure
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
BMP15 p.Ala180Thr
Conflicting
Single submitter
ovarian dysgenesis 2
Predictors lean, ClinVar uncertain 27
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
BMP15 p.Arg122Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Arg244Gln
Uncertain significance
Single submitter
ovarian dysgenesis 2
-
BMP15 p.Arg326Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- BMP15 p.Arg329His Uncertain significance Single submitter
-
BMP15 p.Arg8Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Asn197Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Asn288Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Cys13Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Gln115His
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Glu380Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Glu50Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Gly252Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.His337Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Ile90Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- BMP15 p.Leu218Pro Uncertain significance Single submitter
-
BMP15 p.Leu63Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Leu63Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Lys245Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Lys361Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Pro123Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Pro335His
Uncertain significance
Single submitter
Inborn genetic diseases
- BMP15 p.Pro359Leu Uncertain significance Single submitter
-
BMP15 p.Ser375Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Thr224Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Tyr137Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Val363Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Arg204Gln
Uncertain significance
No assertion criteria
ovarian dysgenesis 2
Predictors split 24
The independent predictors disagree with each other — read with care.
-
BMP15 p.Gly271Cys
Uncertain significance
Multiple submitters
ovarian dysgenesis 2
-
BMP15 p.Leu148Pro
Benign/Likely benign
Multiple submitters
ovarian dysgenesis 2
-
BMP15 p.Phe194Ser
Benign/Likely benign
Multiple submitters
ovarian dysgenesis 2
-
BMP15 p.Ala269Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Arg138Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Arg244Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Arg329Cys
Uncertain significance
Single submitter
ovarian dysgenesis 2
-
BMP15 p.Arg68Trp
Conflicting
Single submitter
ovarian dysgenesis 2
-
BMP15 p.Arg76Cys
Conflicting
Single submitter
ovarian dysgenesis 2
-
BMP15 p.Arg88Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Asn237Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Asn336Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Gly304Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Gly304Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.His200Tyr
Benign
Single submitter
ovarian dysgenesis 2
-
BMP15 p.His307Arg
Uncertain significance
Single submitter
ovarian dysgenesis 2
-
BMP15 p.Leu7Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Ser166Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Ser299Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Thr239Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Val152Ala
Uncertain significance
Single submitter
ovarian dysgenesis 2
-
BMP15 p.Val367Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
BMP15 p.Leu218Phe
Likely benign
No assertion criteria
BMP15-related disorder
-
BMP15 p.Tyr235Cys
Pathogenic
No assertion criteria
ovarian dysgenesis 2
All BMP15 variants
Pathogenic 8
- p.Arg138His Single submitter ovarian dysgenesis 2 ⚠
- p.Arg206His Single submitter ovarian dysgenesis 2 ⚠
- p.Gln56Ter Single submitter
- p.Ile243Val Single submitter ovarian dysgenesis 2 ⚠
- p.Trp221Arg Single submitter ovarian dysgenesis 2 ⚠
- p.Gln211Ter No assertion criteria premature ovarian failure 4
- p.Met1fs No assertion criteria ovarian dysgenesis 2
- p.Tyr235Cys No assertion criteria ovarian dysgenesis 2 ⚠
Likely pathogenic 4
- p.Arg204Ter Single submitter hereditary chronic pancreatitis
- p.His307Tyr No assertion criteria Genetic non-acquired premature ovarian failure ⚠
- p.Met70Leu No assertion criteria Genetic non-acquired premature ovarian failure ⚠
- p.Trp155fs No assertion criteria ovarian dysgenesis 2
Conflicting classifications of pathogenicity 3
- p.Ala180Thr Single submitter ovarian dysgenesis 2 ⚠
- p.Arg68Trp Single submitter ovarian dysgenesis 2 ⚠
- p.Arg76Cys Single submitter ovarian dysgenesis 2 ⚠
Benign 9
- c.329-74A>C Multiple submitters
- c.-9C>G Multiple submitters ovarian dysgenesis 2
- c.*13G>A Multiple submitters ovarian dysgenesis 2
- p.Asn103Ser Multiple submitters ovarian dysgenesis 2
- p.His337= Multiple submitters ovarian dysgenesis 2
- p.Leu263dup Multiple submitters
- p.Ser273= Multiple submitters ovarian dysgenesis 2
- p.Ser284= Multiple submitters ovarian dysgenesis 2
- p.His200Tyr Single submitter ovarian dysgenesis 2 ⚠
Benign/Likely benign 4
- p.Gly54= Multiple submitters ovarian dysgenesis 2
- p.Leu148Pro Multiple submitters ovarian dysgenesis 2 ⚠
- p.Phe194Ser Multiple submitters ovarian dysgenesis 2 ⚠
- p.Ser5Arg Multiple submitters ovarian dysgenesis 2
Likely benign 7
- p.Arg145His Single submitter Inborn genetic diseases
- p.Arg75Gln Single submitter Inborn genetic diseases
- p.Gly29Arg Single submitter Inborn genetic diseases
- p.Leu203= Single submitter
- p.Met177Leu Single submitter Inborn genetic diseases
- p.Pro174Ser Single submitter ovarian dysgenesis 2
- p.Leu218Phe No assertion criteria BMP15-related disorder ⚠
Uncertain significance 44
- p.Gly271Cys Multiple submitters ovarian dysgenesis 2 ⚠
- p.Ala269Glu Single submitter Inborn genetic diseases ⚠
- p.Arg122Gly Single submitter Inborn genetic diseases ⚠
- p.Arg138Cys Single submitter Inborn genetic diseases ⚠
- p.Arg244Gln Single submitter ovarian dysgenesis 2 ⚠
- p.Arg244Trp Single submitter Inborn genetic diseases ⚠
- p.Arg326Gln Single submitter Inborn genetic diseases ⚠
- p.Arg329Cys Single submitter ovarian dysgenesis 2 ⚠
- p.Arg329His Single submitter ⚠
- p.Arg88Cys Single submitter Inborn genetic diseases ⚠
- p.Arg8Ile Single submitter Inborn genetic diseases ⚠
- p.Asn197Ile Single submitter Inborn genetic diseases ⚠
- p.Asn237Ser Single submitter Inborn genetic diseases ⚠
- p.Asn288Asp Single submitter Inborn genetic diseases ⚠
- p.Asn336Ser Single submitter Inborn genetic diseases ⚠
- p.Cys13Tyr Single submitter Inborn genetic diseases ⚠
- p.Gln115His Single submitter Inborn genetic diseases ⚠
- p.Glu380Ala Single submitter Inborn genetic diseases ⚠
- p.Glu50Gln Single submitter Inborn genetic diseases ⚠
- p.Gly252Val Single submitter Inborn genetic diseases ⚠
- p.Gly304Asp Single submitter Inborn genetic diseases ⚠
- p.Gly304Ser Single submitter Inborn genetic diseases ⚠
- p.His307Arg Single submitter ovarian dysgenesis 2 ⚠
- p.His337Asn Single submitter Inborn genetic diseases ⚠
- p.Ile90Thr Single submitter Inborn genetic diseases ⚠
- p.Leu218Pro Single submitter ⚠
- p.Leu63Gln Single submitter Inborn genetic diseases ⚠
- p.Leu63Pro Single submitter Inborn genetic diseases ⚠
- p.Leu7Val Single submitter Inborn genetic diseases ⚠
- p.Lys245Arg Single submitter Inborn genetic diseases ⚠
- p.Lys361Arg Single submitter Inborn genetic diseases ⚠
- p.Pro123Ser Single submitter Inborn genetic diseases ⚠
- p.Pro335His Single submitter Inborn genetic diseases ⚠
- p.Pro359Leu Single submitter ⚠
- p.Ser166Phe Single submitter Inborn genetic diseases ⚠
- p.Ser299Gly Single submitter Inborn genetic diseases ⚠
- p.Ser375Asn Single submitter Inborn genetic diseases ⚠
- p.Thr224Ala Single submitter Inborn genetic diseases ⚠
- p.Thr239Ile Single submitter Inborn genetic diseases ⚠
- p.Tyr137Asn Single submitter Inborn genetic diseases ⚠
- p.Val152Ala Single submitter ovarian dysgenesis 2 ⚠
- p.Val363Ile Single submitter Inborn genetic diseases ⚠
- p.Val367Phe Single submitter Inborn genetic diseases ⚠
- p.Arg204Gln No assertion criteria ovarian dysgenesis 2 ⚠