BOLA3 — 111 ClinVar variants
All ClinVar germline BOLA3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 50 flagged for review →
2 Pathogenic · 2 Pathogenic/Likely pathogenic · 4 Likely pathogenic · 4 Conflicting · 14 Benign · 2 Benign/Likely benign · 25 Likely benign · 58 Uncertain significance
Full BOLA3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 50
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
BOLA3 p.Arg107Cys
Conflicting
Single submitter
multiple mitochondrial dysfunctions syndrome 2
-
BOLA3 p.Arg46Gln
Conflicting
Single submitter
multiple mitochondrial dysfunctions syndrome 2
Predictors lean, ClinVar uncertain 24
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
BOLA3 p.Arg107His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
BOLA3 p.Gln86Glu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
BOLA3 p.Ile55Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
BOLA3 p.Ile55Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
BOLA3 p.Ser5Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
- BOLA3 p.Ala49Asp Uncertain significance Single submitter
-
BOLA3 p.Ala9Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Arg99Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Arg99Trp
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 2
-
BOLA3 p.Asn85Asp
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 2
- BOLA3 p.Glu90Lys Uncertain significance Single submitter
-
BOLA3 p.Gly57Glu
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 2
-
BOLA3 p.Ile92Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Met62Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Met95Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Phe44Cys
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 2
-
BOLA3 p.Pro11Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Pro6Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Ser5Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Ser5Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- BOLA3 p.Thr102Asn Uncertain significance Single submitter
- BOLA3 p.Thr28Ala Uncertain significance Single submitter
-
BOLA3 p.Thr30Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- BOLA3 p.Tyr63Asn Uncertain significance Single submitter
Predictors split 24
The independent predictors disagree with each other — read with care.
-
BOLA3 p.Arg24Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
BOLA3 p.Arg99Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
BOLA3 p.Ile100Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
BOLA3 p.Phe26Leu
Uncertain significance
Multiple submitters
multiple mitochondrial dysfunctions syndrome 2
-
BOLA3 p.Thr30Asn
Uncertain significance
Multiple submitters
Inborn genetic diseases
- BOLA3 p.Thr48Ala Uncertain significance Multiple submitters
-
BOLA3 p.Tyr63Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
BOLA3 p.Ala2Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Ala61Thr
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 2
-
BOLA3 p.Ala7Thr
Conflicting
Single submitter
multiple mitochondrial dysfunctions syndrome 2
- BOLA3 p.Ala7Val Uncertain significance Single submitter
-
BOLA3 p.Ala8Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Arg14Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- BOLA3 p.Arg17Cys Uncertain significance Single submitter
- BOLA3 p.Arg24Trp Uncertain significance Single submitter
- BOLA3 p.Gln82Glu Uncertain significance Single submitter
-
BOLA3 p.Gln86His
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 2
- BOLA3 p.Glu31Asp Uncertain significance Single submitter
- BOLA3 p.Gly32Ala Uncertain significance Single submitter
-
BOLA3 p.Gly32Val
Uncertain significance
Single submitter
Inborn genetic diseases
- BOLA3 p.Ile67Met Uncertain significance Single submitter
-
BOLA3 p.Lys106Arg
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 2
-
BOLA3 p.Pro45Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
BOLA3 p.Thr28Pro
Uncertain significance
Single submitter
multiple mitochondrial dysfunctions syndrome 2
All BOLA3 variants
Pathogenic 2
- p.Arg46Ter Multiple submitters multiple mitochondrial dysfunctions syndrome 2
- p.Glu42fs No assertion criteria multiple mitochondrial dysfunctions syndrome 2
Pathogenic/Likely pathogenic 2
- p.Cys59Tyr Multiple submitters BOLA3-related disorder
- p.Glu74del No assertion criteria multiple mitochondrial dysfunctions syndrome 2
Likely pathogenic 4
- p.Ile67Asn Multiple submitters multiple mitochondrial dysfunctions syndrome 2
- c.259-1G>C Single submitter multiple mitochondrial dysfunctions syndrome 2
- p.Glu33fs Single submitter multiple mitochondrial dysfunctions syndrome 2
- p.Val84Ala Single submitter multiple mitochondrial dysfunctions syndrome 2
Conflicting classifications of pathogenicity 4
- c.258+9A>C Single submitter multiple mitochondrial dysfunctions syndrome 2
- p.Ala7Thr Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Arg107Cys Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Arg46Gln Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
Benign 14
- c.259-18T>G Multiple submitters
- c.54+307G>A Multiple submitters
- c.54+46G>A Multiple submitters
- c.54+64C>T Multiple submitters
- c.55-248T>G Multiple submitters
- c.169+101G>A Single submitter
- c.169+141C>T Single submitter
- c.169+321C>T Single submitter
- c.258+248T>A Single submitter
- c.259-205A>T Single submitter
- c.259-291del Single submitter
- c.259-299A>C Single submitter
- c.259-309_259-308dup Single submitter
- c.259-309dup Single submitter
Benign/Likely benign 2
- c.54+12C>G Multiple submitters
- p.Gly15= Multiple submitters multiple mitochondrial dysfunctions syndrome 2
Likely benign 25
- c.169+14C>A Multiple submitters
- c.169+28C>T Multiple submitters
- c.55-322A>G Multiple submitters
- c.-164G>C Multiple submitters
- c.169+14C>T Single submitter
- c.169+15A>G Single submitter
- c.169+17T>C Single submitter
- c.169+26G>A Single submitter
- c.170-11G>A Single submitter
- c.259-19A>T Single submitter
- c.259-309_259-307dup Single submitter
- c.54+15G>A Single submitter
- c.54+16G>A Single submitter
- c.54+16G>T Single submitter
- c.54+19G>A Single submitter
- c.54+294A>G Single submitter
- c.-3G>C Single submitter
- p.Ala3= Single submitter
- p.Ala47= Single submitter
- p.Arg99= Single submitter Inborn genetic diseases
- p.Glu31= Single submitter
- p.Glu94= Single submitter Inborn genetic diseases
- p.Leu19= Single submitter
- p.Thr102= Single submitter
- p.Val104= Single submitter
Uncertain significance 58
- p.Arg107His Multiple submitters Inborn genetic diseases ⚠
- p.Arg24Gln Multiple submitters Inborn genetic diseases ⚠
- p.Arg99Gln Multiple submitters Inborn genetic diseases ⚠
- p.Gln86Glu Multiple submitters Inborn genetic diseases ⚠
- p.Ile100Val Multiple submitters Inborn genetic diseases ⚠
- p.Ile55Thr Multiple submitters Inborn genetic diseases ⚠
- p.Ile55Val Multiple submitters Inborn genetic diseases ⚠
- p.Phe26Leu Multiple submitters multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Ser5Ile Multiple submitters Inborn genetic diseases ⚠
- p.Thr30Asn Multiple submitters Inborn genetic diseases ⚠
- p.Thr48Ala Multiple submitters ⚠
- p.Tyr63Phe Multiple submitters Inborn genetic diseases ⚠
- c.170-10T>A Single submitter multiple mitochondrial dysfunctions syndrome 2
- c.54+3G>A Single submitter
- c.-35C>T Single submitter multiple mitochondrial dysfunctions syndrome 2
- c.-8G>A Single submitter multiple mitochondrial dysfunctions syndrome 2
- c.*134T>C Single submitter multiple mitochondrial dysfunctions syndrome 2
- c.*190G>A Single submitter multiple mitochondrial dysfunctions syndrome 2
- c.*31T>C Single submitter multiple mitochondrial dysfunctions syndrome 2
- p.Ala2Ser Single submitter Inborn genetic diseases ⚠
- p.Ala49Asp Single submitter ⚠
- p.Ala61Thr Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Ala7= Single submitter multiple mitochondrial dysfunctions syndrome 2
- p.Ala7Val Single submitter ⚠
- p.Ala8Thr Single submitter Inborn genetic diseases ⚠
- p.Ala9Val Single submitter Inborn genetic diseases ⚠
- p.Arg14Cys Single submitter Inborn genetic diseases ⚠
- p.Arg17Cys Single submitter ⚠
- p.Arg24Trp Single submitter ⚠
- p.Arg99Leu Single submitter Inborn genetic diseases ⚠
- p.Arg99Trp Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Asn85Asp Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Gln82Glu Single submitter ⚠
- p.Gln86His Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Glu31Asp Single submitter ⚠
- p.Glu90Lys Single submitter ⚠
- p.Gly18= Single submitter
- p.Gly18_Leu19insIleArgGly Single submitter
- p.Gly32Ala Single submitter ⚠
- p.Gly32Val Single submitter Inborn genetic diseases ⚠
- p.Gly57Glu Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Ile67Met Single submitter ⚠
- p.Ile92Thr Single submitter Inborn genetic diseases ⚠
- p.Lys106Arg Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Met62Val Single submitter Inborn genetic diseases ⚠
- p.Met95Val Single submitter Inborn genetic diseases ⚠
- p.Phe44Cys Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Pro11Leu Single submitter Inborn genetic diseases ⚠
- p.Pro45Arg Single submitter Inborn genetic diseases ⚠
- p.Pro6Ser Single submitter Inborn genetic diseases ⚠
- p.Ser103fs Single submitter multiple mitochondrial dysfunctions syndrome 2
- p.Ser5Asn Single submitter Inborn genetic diseases ⚠
- p.Ser5Thr Single submitter Inborn genetic diseases ⚠
- p.Thr102Asn Single submitter ⚠
- p.Thr28Ala Single submitter ⚠
- p.Thr28Pro Single submitter multiple mitochondrial dysfunctions syndrome 2 ⚠
- p.Thr30Ile Single submitter Inborn genetic diseases ⚠
- p.Tyr63Asn Single submitter ⚠