CABP4 — 382 ClinVar variants

All ClinVar germline CABP4 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 152 flagged for review →

19 Pathogenic · 5 Pathogenic/Likely pathogenic · 6 Likely pathogenic · 28 Conflicting · 28 Benign · 3 Benign/Likely benign · 94 Likely benign · 199 Uncertain significance

Full CABP4 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 152

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 9

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 79

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 64

The independent predictors disagree with each other — read with care.

All CABP4 variants

Pathogenic 19

Pathogenic/Likely pathogenic 5

  • c.800_801delAG Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • p.Arg209Ter Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • p.Arg49Ter Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • p.Arg98Ter Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • p.Pro22fs Multiple submitters cone-rod synaptic disorder, congenital nonprogressive

Likely pathogenic 6

Conflicting classifications of pathogenicity 28

  • c.367-16G>A Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • c.367-8C>T Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • c.398-8C>T Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • c.651+15G>A Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • p.Ala23= Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • p.Ala244Val Single submitter Inborn genetic diseases ⚠
  • p.Arg124Cys Single submitter cone-rod synaptic disorder, congenital nonprogressive ⚠
  • p.Arg209Leu Single submitter cone-rod synaptic disorder, congenital nonprogressive ⚠
  • p.Arg253Ter Single submitter inherited retinal dystrophy
  • p.Arg52Gln Single submitter ⚠
  • p.Arg94His Single submitter cone-rod synaptic disorder, congenital nonprogressive ⚠
  • p.Asn72His Single submitter cone-rod synaptic disorder, congenital nonprogressive ⚠
  • p.Asp106= Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • p.Glu34= Single submitter
  • p.Glu4Gln Single submitter cone-rod synaptic disorder, congenital nonprogressive ⚠
  • p.Gly183Arg Single submitter cone-rod synaptic disorder, congenital nonprogressive ⚠
  • p.Gly63Ser Single submitter ⚠
  • p.His105= Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • p.Ile16Thr Single submitter Inborn genetic diseases ⚠
  • p.Ile177= Single submitter
  • p.Leu193= Single submitter
  • p.Leu272= Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • p.Ser103= Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • p.Ser174= Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • p.Thr202Met Single submitter inherited retinal dystrophy ⚠
  • p.Thr76= Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • p.Val263Ile Single submitter Inborn genetic diseases ⚠
  • p.Asn258Ile No assertion criteria achromatopsia ⚠

Benign 28

  • c.541+7_541+8delinsGC Multiple submitters inherited retinal dystrophy
  • c.541+7C>G Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • c.541+88C>G Multiple submitters
  • c.541+8A>C Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • c.542-56C>T Multiple submitters
  • c.800-5C>T Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • c.*119T>G Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • c.*120T>A Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • c.*1697A>G Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • p.Arg100His Multiple submitters ⚠
  • p.Arg18His Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • p.Asp132= Multiple submitters
  • p.Asp249= Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • p.Gly17Ala Multiple submitters
  • c.541+7_541+8del Single submitter
  • c.542-205G>C Single submitter
  • c.651+151A>C Single submitter
  • c.652-95AAATA[3] Single submitter
  • c.-112-575A>C Single submitter
  • c.*1435G>A Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • c.*1857T>C Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • c.*1859C>T Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • c.*2195G>A Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • c.*2327G>A Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • c.*2679A>G Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • c.*876G>A Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • c.*963C>T Single submitter cone-rod synaptic disorder, congenital nonprogressive
  • p.Leu126= Single submitter

Benign/Likely benign 3

  • c.652-11G>A Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • c.799+15C>T Multiple submitters cone-rod synaptic disorder, congenital nonprogressive
  • p.Phe120= Multiple submitters cone-rod synaptic disorder, congenital nonprogressive

Likely benign 94

Uncertain significance 199