CAPN15 — 369 ClinVar variants

All ClinVar germline CAPN15 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 259 flagged for review →

5 Pathogenic · 3 Likely pathogenic · 2 Conflicting · 10 Benign · 89 Likely benign · 260 Uncertain significance

Full CAPN15 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 259

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors lean, ClinVar uncertain 143

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 116

The independent predictors disagree with each other — read with care.

All CAPN15 variants

Pathogenic 5

  • c.2904+1_2905-45del No assertion criteria oculogastrointestinal-neurodevelopmental syndrome
  • p.Arg1028Lys No assertion criteria oculogastrointestinal-neurodevelopmental syndrome
  • p.Arg800Trp No assertion criteria oculogastrointestinal-neurodevelopmental syndrome
  • p.Gly969Ser No assertion criteria oculogastrointestinal-neurodevelopmental syndrome ⚠
  • p.Ser720Phe No assertion criteria oculogastrointestinal-neurodevelopmental syndrome

Likely pathogenic 3

  • p.Glu210Ter Single submitter oculogastrointestinal-neurodevelopmental syndrome
  • p.Gly653Ser Single submitter oculogastrointestinal-neurodevelopmental syndrome
  • p.Ser335fs Single submitter

Conflicting classifications of pathogenicity 2

  • c.3083+5_3083+40del Single submitter oculogastrointestinal-neurodevelopmental syndrome
  • p.Arg736Ter Single submitter oculogastrointestinal-neurodevelopmental syndrome

Benign 10

Likely benign 89

Uncertain significance 260