CCNF — 207 ClinVar variants
All ClinVar germline CCNF variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 118 flagged for review →
2 Pathogenic · 1 Pathogenic/Likely pathogenic · 1 Conflicting · 43 Benign · 4 Benign/Likely benign · 42 Likely benign · 114 Uncertain significance
Full CCNF gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 118
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 2
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
-
CCNF p.Ser621Gly
Pathogenic/Likely pathogenic
Multiple submitters
frontotemporal dementia and/or amyotrophic lateral sclerosis 5
-
CCNF p.Glu624Lys
Pathogenic
No assertion criteria
frontotemporal dementia and/or amyotrophic lateral sclerosis 5
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 74
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
CCNF p.Arg140Gln
Uncertain significance
Multiple submitters
amyotrophic lateral sclerosis
- CCNF p.Arg24Lys Uncertain significance Multiple submitters
- CCNF p.Gly254Ala Uncertain significance Multiple submitters
- CCNF p.Gly719Val Uncertain significance Multiple submitters
-
CCNF p.Ala146Thr
Uncertain significance
Single submitter
frontotemporal dementia and/or amyotrophic lateral sclerosis 5
- CCNF p.Ala166Thr Uncertain significance Single submitter
- CCNF p.Ala267Thr Uncertain significance Single submitter
- CCNF p.Ala358Thr Uncertain significance Single submitter
- CCNF p.Ala448Thr Uncertain significance Single submitter
- CCNF p.Ala560Asp Uncertain significance Single submitter
- CCNF p.Ala57Thr Uncertain significance Single submitter
- CCNF p.Ala631Val Uncertain significance Single submitter
- CCNF p.Ala658Val Uncertain significance Single submitter
- CCNF p.Ala670Glu Uncertain significance Single submitter
- CCNF p.Arg192Lys Uncertain significance Single submitter
- CCNF p.Arg245Gln Uncertain significance Single submitter
- CCNF p.Arg277Thr Uncertain significance Single submitter
- CCNF p.Arg343Gln Uncertain significance Single submitter
- CCNF p.Arg349Gln Uncertain significance Single submitter
- CCNF p.Arg521His Uncertain significance Single submitter
-
CCNF p.Arg572Leu
Uncertain significance
Single submitter
frontotemporal dementia and/or amyotrophic lateral sclerosis 5
- CCNF p.Arg688His Uncertain significance Single submitter
- CCNF p.Arg785Ser Uncertain significance Single submitter
- CCNF p.Asn29His Uncertain significance Single submitter
- CCNF p.Asp484Gly Uncertain significance Single submitter
- CCNF p.Asp606Asn Uncertain significance Single submitter
- CCNF p.Asp610His Uncertain significance Single submitter
- CCNF p.Asp637Asn Uncertain significance Single submitter
- CCNF p.Asp637Gly Uncertain significance Single submitter
- CCNF p.Asp731Asn Uncertain significance Single submitter
- CCNF p.Cys747Gly Uncertain significance Single submitter
- CCNF p.Gln177Arg Uncertain significance Single submitter
- CCNF p.Gln271Pro Uncertain significance Single submitter
- CCNF p.Gln297Glu Uncertain significance Single submitter
- CCNF p.Gln749Arg Uncertain significance Single submitter
- CCNF p.Glu336Gly Uncertain significance Single submitter
- CCNF p.Glu557Val Uncertain significance Single submitter
-
CCNF p.Glu575Asp
Uncertain significance
Single submitter
amyotrophic lateral sclerosis
- CCNF p.Glu592Gln Uncertain significance Single submitter
- CCNF p.Glu598Ala Uncertain significance Single submitter
- CCNF p.Glu622Asp Uncertain significance Single submitter
- CCNF p.Gly556Val Uncertain significance Single submitter
- CCNF p.His182Gln Uncertain significance Single submitter
- CCNF p.His493Tyr Uncertain significance Single submitter
- CCNF p.His741Arg Uncertain significance Single submitter
- CCNF p.Ile367Val Uncertain significance Single submitter
- CCNF p.Leu600Pro Uncertain significance Single submitter
- CCNF p.Leu88Val Uncertain significance Single submitter
- CCNF p.Lys165Thr Uncertain significance Single submitter
- CCNF p.Lys183Thr Uncertain significance Single submitter
-
CCNF p.Lys97Arg
Uncertain significance
Single submitter
polyneuropathy
- CCNF p.Phe480Ile Uncertain significance Single submitter
- CCNF p.Phe552Ser Uncertain significance Single submitter
- CCNF p.Pro550Gln Uncertain significance Single submitter
- CCNF p.Pro550Leu Uncertain significance Single submitter
- CCNF p.Pro755Thr Uncertain significance Single submitter
- CCNF p.Pro761Leu Uncertain significance Single submitter
- CCNF p.Pro83Leu Uncertain significance Single submitter
- CCNF p.Ser221Asn Uncertain significance Single submitter
- CCNF p.Ser3Gly Uncertain significance Single submitter
- CCNF p.Ser566Leu Uncertain significance Single submitter
- CCNF p.Ser621Thr Uncertain significance Single submitter
- CCNF p.Ser726Leu Uncertain significance Single submitter
- CCNF p.Ser758Arg Uncertain significance Single submitter
- CCNF p.Thr381Met Uncertain significance Single submitter
- CCNF p.Thr472Ile Uncertain significance Single submitter
- CCNF p.Thr551Asn Uncertain significance Single submitter
- CCNF p.Thr555Ser Uncertain significance Single submitter
- CCNF p.Thr680Pro Uncertain significance Single submitter
- CCNF p.Trp470Cys Uncertain significance Single submitter
- CCNF p.Trp475Arg Uncertain significance Single submitter
- CCNF p.Val143Met Uncertain significance Single submitter
- CCNF p.Val283Ile Uncertain significance Single submitter
- CCNF p.Val714Gly Uncertain significance Single submitter
Predictors split 41
The independent predictors disagree with each other — read with care.
-
CCNF p.Arg572Gln
Uncertain significance
Multiple submitters
frontotemporal dementia and/or amyotrophic lateral sclerosis 5
- CCNF p.Val714Met Benign Multiple submitters
- CCNF p.Ala124Val Uncertain significance Single submitter
- CCNF p.Arg133Cys Uncertain significance Single submitter
- CCNF p.Arg140Trp Uncertain significance Single submitter
- CCNF p.Arg154Cys Uncertain significance Single submitter
-
CCNF p.Arg21Gln
Uncertain significance
Single submitter
frontotemporal dementia and/or amyotrophic lateral sclerosis 5
- CCNF p.Arg239Gln Uncertain significance Single submitter
- CCNF p.Arg245Gly Uncertain significance Single submitter
- CCNF p.Arg343Trp Uncertain significance Single submitter
- CCNF p.Arg767Gln Uncertain significance Single submitter
- CCNF p.Arg767Trp Uncertain significance Single submitter
- CCNF p.Arg93Ser Uncertain significance Single submitter
-
CCNF p.Gln302Pro
Uncertain significance
Single submitter
frontotemporal dementia and/or amyotrophic lateral sclerosis 5
- CCNF p.Glu92Ala Uncertain significance Single submitter
- CCNF p.Glu96Val Uncertain significance Single submitter
-
CCNF p.Gly161Arg
Uncertain significance
Single submitter
frontotemporal dementia and/or amyotrophic lateral sclerosis 5
- CCNF p.Gly4Arg Uncertain significance Single submitter
-
CCNF p.His69Tyr
Uncertain significance
Single submitter
frontotemporal dementia and/or amyotrophic lateral sclerosis 5
-
CCNF p.Leu209Val
Uncertain significance
Single submitter
amyotrophic lateral sclerosis
- CCNF p.Leu247Val Likely benign Single submitter
- CCNF p.Lys571Glu Uncertain significance Single submitter
- CCNF p.Phe152Leu Uncertain significance Single submitter
- CCNF p.Pro710His Uncertain significance Single submitter
- CCNF p.Ser158Leu Uncertain significance Single submitter
- CCNF p.Ser481Phe Uncertain significance Single submitter
- CCNF p.Ser532Gly Uncertain significance Single submitter
- CCNF p.Ser595Cys Uncertain significance Single submitter
- CCNF p.Ser603Thr Uncertain significance Single submitter
- CCNF p.Ser60Tyr Uncertain significance Single submitter
- CCNF p.Ser653Phe Uncertain significance Single submitter
- CCNF p.Thr419Met Uncertain significance Single submitter
- CCNF p.Thr471Ile Uncertain significance Single submitter
- CCNF p.Tyr110Cys Uncertain significance Single submitter
- CCNF p.Val55Ile Uncertain significance Single submitter
- CCNF p.Val629Met Uncertain significance Single submitter
-
CCNF p.Val640Met
Uncertain significance
Single submitter
amyotrophic lateral sclerosis
- CCNF p.Val72Ala Uncertain significance Single submitter
- CCNF p.Val765Met Uncertain significance Single submitter
-
CCNF p.Arg392Thr
Pathogenic
No assertion criteria
frontotemporal dementia and/or amyotrophic lateral sclerosis 5
-
CCNF p.Leu531Arg
Likely benign
No assertion criteria
CCNF-related disorder
All CCNF variants
Pathogenic 2
- p.Arg392Thr No assertion criteria frontotemporal dementia and/or amyotrophic lateral sclerosis 5 ⚠
- p.Glu624Lys No assertion criteria frontotemporal dementia and/or amyotrophic lateral sclerosis 5 ⚠
Pathogenic/Likely pathogenic 1
- p.Ser621Gly Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 5 ⚠
Conflicting classifications of pathogenicity 1
- p.Gly86Glu Single submitter ⚠
Benign 43
- c.1095-28A>G Multiple submitters
- c.1095-7G>A Multiple submitters
- c.1218+32T>C Multiple submitters
- c.16+214A>C Multiple submitters
- c.17-183A>G Multiple submitters
- c.17-27C>G Multiple submitters
- c.1886-133A>G Multiple submitters
- c.346+22A>G Multiple submitters
- c.347-132A>T Multiple submitters
- c.540+161C>T Multiple submitters
- c.540+97G>T Multiple submitters
- c.594+87T>C Multiple submitters
- c.699+75T>G Multiple submitters
- c.-1G>C Multiple submitters
- p.Glu396Asp Multiple submitters
- p.His464= Multiple submitters
- p.Ser734= Multiple submitters
- p.Val714Met Multiple submitters ⚠
- c.1094+105_1094+106dup Single submitter
- c.1094+107G>T Single submitter
- c.1400-42TCCCCTCCA[3] Single submitter
- c.1487+155G>C Single submitter
- c.1886-240G>A Single submitter
- c.278+112T>C Single submitter
- c.279-139AT[10] Single submitter
- c.279-140_279-123del Single submitter
- c.279-140_279-125del Single submitter
- c.279-142_279-123del Single submitter
- c.279-142_279-129del Single submitter
- c.279-150CA[7] Single submitter
- c.279-178_279-161del Single submitter
- c.279-206T>G Single submitter
- c.279-209AT[7] Single submitter
- c.347-118_347-117insT Single submitter
- c.541-148dup Single submitter
- c.541-149_541-148dup Single submitter
- c.541-216_541-215dup Single submitter
- c.595-248C>T Single submitter
- c.777+143C>T Single submitter
- c.929+137dup Single submitter
- c.929+219G>A Single submitter
- p.Phe604Ile Single submitter
- p.Ala74Thr No assertion criteria CCNF-related disorder
Benign/Likely benign 4
- p.Ala591= Multiple submitters
- p.Arg406Gln Multiple submitters
- p.Glu37= Multiple submitters
- p.Gly617= Multiple submitters
Likely benign 42
- p.Cys488= Multiple submitters
- c.1715+10C>T Single submitter
- c.1715+9C>T Single submitter
- c.278+7C>G Single submitter
- c.540+3G>A Single submitter
- c.930-5C>T Single submitter
- p.Ala166= Single submitter
- p.Ala269Gly Single submitter
- p.Ala454= Single submitter
- p.Arg133His Single submitter
- p.Arg239= Single submitter
- p.Arg451His Single submitter
- p.Arg688Cys Single submitter
- p.Arg691Gln Single submitter
- p.Arg93= Single submitter
- p.Asp500= Single submitter
- p.Gln579= Single submitter
- p.Gln737Leu Single submitter
- p.Glu529Lys Single submitter
- p.Gly465Arg Single submitter
- p.His207Arg Single submitter
- p.His429= Single submitter
- p.His559= Single submitter
- p.His59= Single submitter
- p.Leu247Val Single submitter ⚠
- p.Pro147= Single submitter
- p.Pro589= Single submitter
- p.Pro685Ser Single submitter
- p.Ser445= Single submitter
- p.Ser546= Single submitter
- p.Ser734Leu Single submitter
- p.Thr463Met Single submitter
- p.Thr555Ala Single submitter
- p.Val104= Single submitter
- c.347-4G>A No assertion criteria CCNF-related disorder
- p.Ala145= No assertion criteria CCNF-related disorder
- p.Arg349= No assertion criteria CCNF-related disorder
- p.Leu352= No assertion criteria CCNF-related disorder
- p.Leu531Arg No assertion criteria CCNF-related disorder ⚠
- p.Ser704= No assertion criteria CCNF-related disorder
- p.Tyr250= No assertion criteria CCNF-related disorder
- p.Val411= No assertion criteria CCNF-related disorder
Uncertain significance 114
- p.Arg140Gln Multiple submitters amyotrophic lateral sclerosis ⚠
- p.Arg24Lys Multiple submitters ⚠
- p.Arg572Gln Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 5 ⚠
- p.Gly254Ala Multiple submitters ⚠
- p.Gly719Val Multiple submitters ⚠
- c.595-8_595-5del Single submitter
- p.Ala124Val Single submitter ⚠
- p.Ala146Thr Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 5 ⚠
- p.Ala166Thr Single submitter ⚠
- p.Ala267Thr Single submitter ⚠
- p.Ala358Thr Single submitter ⚠
- p.Ala448Thr Single submitter ⚠
- p.Ala560Asp Single submitter ⚠
- p.Ala57Thr Single submitter ⚠
- p.Ala631Val Single submitter ⚠
- p.Ala658Val Single submitter ⚠
- p.Ala670Glu Single submitter ⚠
- p.Arg133Cys Single submitter ⚠
- p.Arg140Trp Single submitter ⚠
- p.Arg154Cys Single submitter ⚠
- p.Arg192Lys Single submitter ⚠
- p.Arg21Gln Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 5 ⚠
- p.Arg239Gln Single submitter ⚠
- p.Arg245Gln Single submitter ⚠
- p.Arg245Gly Single submitter ⚠
- p.Arg248fs Single submitter
- p.Arg277Thr Single submitter ⚠
- p.Arg343Gln Single submitter ⚠
- p.Arg343Trp Single submitter ⚠
- p.Arg349Gln Single submitter ⚠
- p.Arg521His Single submitter ⚠
- p.Arg572Leu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 5 ⚠
- p.Arg688His Single submitter ⚠
- p.Arg767Gln Single submitter ⚠
- p.Arg767Trp Single submitter ⚠
- p.Arg785Ser Single submitter ⚠
- p.Arg93Ser Single submitter ⚠
- p.Asn29His Single submitter ⚠
- p.Asp484Gly Single submitter ⚠
- p.Asp606Asn Single submitter ⚠
- p.Asp610His Single submitter ⚠
- p.Asp637Asn Single submitter ⚠
- p.Asp637Gly Single submitter ⚠
- p.Asp731Asn Single submitter ⚠
- p.Cys747Gly Single submitter ⚠
- p.Gln177Arg Single submitter ⚠
- p.Gln271Pro Single submitter ⚠
- p.Gln297Glu Single submitter ⚠
- p.Gln302Pro Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 5 ⚠
- p.Gln723Ter Single submitter
- p.Gln749Arg Single submitter ⚠
- p.Glu336Gly Single submitter ⚠
- p.Glu557Val Single submitter ⚠
- p.Glu575Asp Single submitter amyotrophic lateral sclerosis ⚠
- p.Glu592Gln Single submitter ⚠
- p.Glu598Ala Single submitter ⚠
- p.Glu622Asp Single submitter ⚠
- p.Glu92Ala Single submitter ⚠
- p.Glu96Val Single submitter ⚠
- p.Gly161Arg Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 5 ⚠
- p.Gly4Arg Single submitter ⚠
- p.Gly556Val Single submitter ⚠
- p.His182Gln Single submitter ⚠
- p.His493Tyr Single submitter ⚠
- p.His69Tyr Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 5 ⚠
- p.His741Arg Single submitter ⚠
- p.Ile367Val Single submitter ⚠
- p.Leu209Val Single submitter amyotrophic lateral sclerosis ⚠
- p.Leu600Pro Single submitter ⚠
- p.Leu88Val Single submitter ⚠
- p.Lys165Thr Single submitter ⚠
- p.Lys183Thr Single submitter ⚠
- p.Lys571Glu Single submitter ⚠
- p.Lys97Arg Single submitter polyneuropathy ⚠
- p.Phe152Leu Single submitter ⚠
- p.Phe480Ile Single submitter ⚠
- p.Phe552Ser Single submitter ⚠
- p.Pro550Gln Single submitter ⚠
- p.Pro550Leu Single submitter ⚠
- p.Pro710His Single submitter ⚠
- p.Pro755Thr Single submitter ⚠
- p.Pro761Leu Single submitter ⚠
- p.Pro83Leu Single submitter ⚠
- p.Ser158Leu Single submitter ⚠
- p.Ser221Asn Single submitter ⚠
- p.Ser3Gly Single submitter ⚠
- p.Ser481Phe Single submitter ⚠
- p.Ser532Gly Single submitter ⚠
- p.Ser566Leu Single submitter ⚠
- p.Ser595Cys Single submitter ⚠
- p.Ser603Thr Single submitter ⚠
- p.Ser60Tyr Single submitter ⚠
- p.Ser621Thr Single submitter ⚠
- p.Ser653Phe Single submitter ⚠
- p.Ser726Leu Single submitter ⚠
- p.Ser758Arg Single submitter ⚠
- p.Thr381Met Single submitter ⚠
- p.Thr419Met Single submitter ⚠
- p.Thr471Ile Single submitter ⚠
- p.Thr472Ile Single submitter ⚠
- p.Thr551Asn Single submitter ⚠
- p.Thr555Ser Single submitter ⚠
- p.Thr680Pro Single submitter ⚠
- p.Trp470Cys Single submitter ⚠
- p.Trp475Arg Single submitter ⚠
- p.Tyr110Cys Single submitter ⚠
- p.Val143Met Single submitter ⚠
- p.Val283Ile Single submitter ⚠
- p.Val55Ile Single submitter ⚠
- p.Val629Met Single submitter ⚠
- p.Val640Met Single submitter amyotrophic lateral sclerosis ⚠
- p.Val714Gly Single submitter ⚠
- p.Val72Ala Single submitter ⚠
- p.Val765Met Single submitter ⚠