CD27 — 230 ClinVar variants

All ClinVar germline CD27 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 111 flagged for review →

11 Pathogenic · 2 Pathogenic/Likely pathogenic · 5 Likely pathogenic · 5 Conflicting · 10 Benign · 1 Benign/Likely benign · 81 Likely benign · 115 Uncertain significance

Full CD27 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 111

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 2

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 79

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 30

The independent predictors disagree with each other — read with care.

All CD27 variants

Pathogenic 11

  • p.Cys53Tyr Multiple submitters lymphoproliferative syndrome 2
  • p.Cys84fs Single submitter combined immunodeficiency
  • p.Gln134fs Single submitter lymphoproliferative syndrome 2
  • p.Gln141Ter Single submitter lymphoproliferative syndrome 2
  • p.His80fs Single submitter lymphoproliferative syndrome 2
  • p.His86fs Single submitter lymphoproliferative syndrome 2
  • p.Met160fs Single submitter lymphoproliferative syndrome 2
  • p.Ser137fs Single submitter lymphoproliferative syndrome 2
  • p.Ser89fs Single submitter
  • p.Tyr147Ter Single submitter lymphoproliferative syndrome 2
  • p.Trp8Ter No assertion criteria lymphoproliferative syndrome 2

Pathogenic/Likely pathogenic 2

  • p.Asp52fs Multiple submitters lymphoproliferative syndrome 2
  • p.Leu136fs Multiple submitters lymphoproliferative syndrome 2

Likely pathogenic 5

Conflicting classifications of pathogenicity 5

Benign 10

Benign/Likely benign 1

  • p.Cys10= Multiple submitters autoinflammatory syndrome

Likely benign 81

  • p.Arg238= Multiple submitters lymphoproliferative syndrome 2
  • p.Asp165= Multiple submitters lymphoproliferative syndrome 2
  • p.Leu184= Multiple submitters lymphoproliferative syndrome 2
  • p.Thr118= Multiple submitters lymphoproliferative syndrome 2
  • c.136+10G>A Single submitter lymphoproliferative syndrome 2
  • c.136+15T>C Single submitter lymphoproliferative syndrome 2
  • c.136+19A>G Single submitter lymphoproliferative syndrome 2
  • c.136+19A>T Single submitter lymphoproliferative syndrome 2
  • c.136+8G>A Single submitter lymphoproliferative syndrome 2
  • c.137-10C>G Single submitter lymphoproliferative syndrome 2
  • c.137-17T>G Single submitter lymphoproliferative syndrome 2
  • c.137-20C>G Single submitter lymphoproliferative syndrome 2
  • c.137-4C>T Single submitter lymphoproliferative syndrome 2
  • c.137-5C>T Single submitter lymphoproliferative syndrome 2
  • c.137-7C>T Single submitter lymphoproliferative syndrome 2
  • c.137-8C>T Single submitter lymphoproliferative syndrome 2
  • c.268+10G>A Single submitter lymphoproliferative syndrome 2
  • c.269-10C>T Single submitter lymphoproliferative syndrome 2
  • c.269-15C>A Single submitter lymphoproliferative syndrome 2
  • c.269-7C>G Single submitter lymphoproliferative syndrome 2
  • c.269-8T>G Single submitter lymphoproliferative syndrome 2
  • c.449-16_449-13del Single submitter lymphoproliferative syndrome 2
  • c.538+11T>G Single submitter lymphoproliferative syndrome 2
  • c.538+14T>C Single submitter lymphoproliferative syndrome 2
  • c.538+7T>C Single submitter lymphoproliferative syndrome 2
  • c.539-13C>T Single submitter lymphoproliferative syndrome 2
  • c.539-15C>T Single submitter lymphoproliferative syndrome 2
  • c.539-20T>C Single submitter lymphoproliferative syndrome 2
  • c.658+10A>G Single submitter lymphoproliferative syndrome 2
  • c.658+14C>T Single submitter lymphoproliferative syndrome 2
  • c.658+15A>T Single submitter lymphoproliferative syndrome 2
  • c.658+18G>A Single submitter lymphoproliferative syndrome 2
  • c.658+19G>T Single submitter lymphoproliferative syndrome 2
  • c.658+7G>C Single submitter lymphoproliferative syndrome 2
  • c.659-10C>G Single submitter lymphoproliferative syndrome 2
  • p.Ala135= Single submitter lymphoproliferative syndrome 2
  • p.Ala135= Single submitter lymphoproliferative syndrome 2
  • p.Ala206= Single submitter lymphoproliferative syndrome 2
  • p.Arg167= Single submitter lymphoproliferative syndrome 2
  • p.Asp54= Single submitter lymphoproliferative syndrome 2
  • p.Asp74= Single submitter lymphoproliferative syndrome 2
  • p.Cys236= Single submitter lymphoproliferative syndrome 2
  • p.Cys39= Single submitter lymphoproliferative syndrome 2
  • p.Cys43= Single submitter lymphoproliferative syndrome 2
  • p.Cys62= Single submitter lymphoproliferative syndrome 2
  • p.Cys81= Single submitter lymphoproliferative syndrome 2
  • p.Cys87= Single submitter lymphoproliferative syndrome 2
  • p.Gln248= Single submitter lymphoproliferative syndrome 2
  • p.Glu227= Single submitter lymphoproliferative syndrome 2
  • p.Glu241= Single submitter lymphoproliferative syndrome 2
  • p.Gly158= Single submitter lymphoproliferative syndrome 2
  • p.His75= Single submitter lymphoproliferative syndrome 2
  • p.Leu136= Single submitter lymphoproliferative syndrome 2
  • p.Leu201= Single submitter lymphoproliferative syndrome 2
  • p.Leu38= Single submitter lymphoproliferative syndrome 2
  • p.Leu49= Single submitter lymphoproliferative syndrome 2
  • p.Leu9= Single submitter lymphoproliferative syndrome 2
  • p.Leu92= Single submitter lymphoproliferative syndrome 2
  • p.Phe200= Single submitter lymphoproliferative syndrome 2
  • p.Pro142= Single submitter lymphoproliferative syndrome 2
  • p.Pro170= Single submitter lymphoproliferative syndrome 2
  • p.Pro24= Single submitter lymphoproliferative syndrome 2
  • p.Pro254= Single submitter lymphoproliferative syndrome 2
  • p.Pro260= Single submitter lymphoproliferative syndrome 2
  • p.Pro67= Single submitter lymphoproliferative syndrome 2
  • p.Ser127= Single submitter lymphoproliferative syndrome 2
  • p.Ser132= Single submitter lymphoproliferative syndrome 2
  • p.Ser133= Single submitter lymphoproliferative syndrome 2
  • p.Ser137= Single submitter lymphoproliferative syndrome 2
  • p.Ser175= Single submitter lymphoproliferative syndrome 2
  • p.Ser187= Single submitter lymphoproliferative syndrome 2
  • p.Ser70= Single submitter lymphoproliferative syndrome 2
  • p.Thr129= Single submitter lymphoproliferative syndrome 2
  • p.Thr14= Single submitter lymphoproliferative syndrome 2
  • p.Thr143= Single submitter
  • p.Thr156= Single submitter lymphoproliferative syndrome 2
  • p.Thr21= Single submitter lymphoproliferative syndrome 2
  • p.Thr77= Single submitter lymphoproliferative syndrome 2
  • p.Tyr217= Single submitter lymphoproliferative syndrome 2
  • p.Val69= Single submitter lymphoproliferative syndrome 2
  • p.Gly17= No assertion criteria CD27-related disorder

Uncertain significance 115