CDH11 — 158 ClinVar variants
All ClinVar germline CDH11 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 107 flagged for review →
8 Pathogenic · 1 Pathogenic/Likely pathogenic · 5 Likely pathogenic · 10 Benign · 3 Benign/Likely benign · 26 Likely benign · 105 Uncertain significance
Full CDH11 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 107
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors lean, ClinVar uncertain 56
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
CDH11 p.Ala228Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CDH11 p.Asp718Asn
Uncertain significance
Multiple submitters
Teebi hypertelorism syndrome 2
-
CDH11 p.Gly45Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CDH11 p.Ile649Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
- CDH11 p.Ala461Ser Uncertain significance Single submitter
-
CDH11 p.Ala475Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ala522Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Ala675Gly Uncertain significance Single submitter
-
CDH11 p.Ala675Val
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Arg28Gln Uncertain significance Single submitter
-
CDH11 p.Arg466Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Arg477Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Arg526Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Asn167Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Asn688Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Asp187Gly
Uncertain significance
Single submitter
Elsahy-Waters syndrome
-
CDH11 p.Asp296Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Asp516His
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Asp729Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Gln393Glu Uncertain significance Single submitter
-
CDH11 p.Glu162Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Glu170Gln
Uncertain significance
Single submitter
Elsahy-Waters syndrome
-
CDH11 p.Glu285Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Glu314Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Glu498Val Uncertain significance Single submitter
-
CDH11 p.Gly403Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Gly668Ser
Uncertain significance
Single submitter
Elsahy-Waters syndrome
-
CDH11 p.Gly744Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.His36Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.His390Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.His424Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.His464Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ile528Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ile574Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ile629Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ile691Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ile91Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Lys694Glu Uncertain significance Single submitter
- CDH11 p.Met241Thr Uncertain significance Single submitter
-
CDH11 p.Met275Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Met382Thr
Uncertain significance
Single submitter
Teebi hypertelorism syndrome 2
-
CDH11 p.Met703Val
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Phe268Val Uncertain significance Single submitter
-
CDH11 p.Phe35Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Phe792Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Ser373Thr Uncertain significance Single submitter
- CDH11 p.Thr214Ile Uncertain significance Single submitter
-
CDH11 p.Thr432Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Thr443Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Thr451Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Tyr232His
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Tyr786Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Val234Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Val272Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Val405Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Arg657Cys
Uncertain significance
No assertion criteria
Teebi hypertelorism syndrome 2
Predictors split 51
The independent predictors disagree with each other — read with care.
- CDH11 p.Ala475Val Benign/Likely benign Multiple submitters
-
CDH11 p.Arg556Trp
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CDH11 p.Gly618Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CDH11 p.Met275Ile
Benign
Multiple submitters
Elsahy-Waters syndrome
-
CDH11 p.Thr255Met
Benign
Multiple submitters
Elsahy-Waters syndrome
-
CDH11 p.Ala470Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ala555Val
Likely benign
Single submitter
Inborn genetic diseases
-
CDH11 p.Ala752Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Arg137Trp
Uncertain significance
Single submitter
Elsahy-Waters syndrome
-
CDH11 p.Arg28Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Arg32Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Arg562Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Asp311Gly Likely benign Single submitter
-
CDH11 p.Asp321Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Asp596Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Asp766Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Asp795Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Gln565Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Glu120Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Gly787Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.His464Tyr
Uncertain significance
Single submitter
Elsahy-Waters syndrome
-
CDH11 p.Ile433Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ile433Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ile456Phe
Likely benign
Single submitter
Inborn genetic diseases
-
CDH11 p.Ile528Met
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Ile621Val Uncertain significance Single submitter
-
CDH11 p.Ile627Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Leu302Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Leu648Arg Uncertain significance Single submitter
-
CDH11 p.Lys357Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Phe690Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Pro156Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Pro189Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Pro269Gln Uncertain significance Single submitter
- CDH11 p.Pro380Leu Uncertain significance Single submitter
- CDH11 p.Pro525Arg Uncertain significance Single submitter
-
CDH11 p.Pro525Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ser271Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ser506Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Ser575Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Thr163Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Thr587Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Tyr232Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Tyr568His
Likely benign
Single submitter
Inborn genetic diseases
-
CDH11 p.Val131Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Val235Met
Uncertain significance
Single submitter
Inborn genetic diseases
- CDH11 p.Val287Ala Uncertain significance Single submitter
-
CDH11 p.Val352Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Val592Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDH11 p.Pro416Leu
Likely benign
No assertion criteria
Mobius syndrome
-
CDH11 p.Val347Leu
Benign
No assertion criteria
CDH11-related disorder
All CDH11 variants
Pathogenic 8
- c.999+1G>T No assertion criteria Elsahy-Waters syndrome
- p.Asp260Glu No assertion criteria Teebi hypertelorism syndrome 2
- p.Glu279Gln No assertion criteria Teebi hypertelorism syndrome 2
- p.Gly327Trp No assertion criteria Teebi hypertelorism syndrome 2
- p.Ile372fs No assertion criteria Elsahy-Waters syndrome
- p.Trp55Ser No assertion criteria Teebi hypertelorism syndrome 2
- p.Tyr232Ter No assertion criteria Elsahy-Waters syndrome
- p.Val374Glu No assertion criteria Teebi hypertelorism syndrome 2
Pathogenic/Likely pathogenic 1
- p.Asp260Asn Multiple submitters Elsahy-Waters syndrome
Likely pathogenic 5
- c.1895-599A>T Single submitter
- p.Arg547Ter Single submitter
- p.Asp260His Single submitter Elsahy-Waters syndrome
- p.Asp366fs Single submitter
- p.Leu77Phe No assertion criteria Teebi hypertelorism syndrome 2
Benign 10
- c.1253+43G>C Multiple submitters Elsahy-Waters syndrome
- c.1642+20C>T Multiple submitters Elsahy-Waters syndrome
- c.644-11T>C Multiple submitters Elsahy-Waters syndrome
- c.811+13A>G Multiple submitters Elsahy-Waters syndrome
- p.Met275Ile Multiple submitters Elsahy-Waters syndrome ⚠
- p.Ser315= Multiple submitters Elsahy-Waters syndrome
- p.Ser373Ala Multiple submitters Elsahy-Waters syndrome
- p.Thr255Met Multiple submitters Elsahy-Waters syndrome ⚠
- p.Thr521= Single submitter
- p.Val347Leu No assertion criteria CDH11-related disorder ⚠
Benign/Likely benign 3
- p.Ala475Val Multiple submitters ⚠
- p.Asn482= Multiple submitters
- p.Gly29= Multiple submitters
Likely benign 26
- p.Val478Ile Multiple submitters Inborn genetic diseases
- c.1895-507A>G Single submitter
- c.523+4C>T Single submitter
- p.Ala555Val Single submitter Inborn genetic diseases ⚠
- p.Ala711= Single submitter
- p.Ala9= Single submitter Inborn genetic diseases
- p.Asn351= Single submitter
- p.Asp311Gly Single submitter ⚠
- p.Asp794= Single submitter
- p.Glu285= Single submitter
- p.Gly250= Single submitter
- p.Gly301= Single submitter
- p.Ile456Phe Single submitter Inborn genetic diseases ⚠
- p.Ile691Met Single submitter
- p.Pro142= Single submitter
- p.Pro157= Single submitter
- p.Pro416= Single submitter
- p.Thr115= Single submitter
- p.Tyr568His Single submitter Inborn genetic diseases ⚠
- p.Tyr743= Single submitter
- c.1895-503C>G No assertion criteria CDH11-related disorder
- c.*7C>T No assertion criteria CDH11-related disorder
- c.*8G>C No assertion criteria CDH11-related disorder
- p.Arg32Gln No assertion criteria Mobius syndrome
- p.Pro416Leu No assertion criteria Mobius syndrome ⚠
- p.Tyr66= No assertion criteria CDH11-related disorder
Uncertain significance 105
- p.Ala228Ser Multiple submitters Inborn genetic diseases ⚠
- p.Arg556Trp Multiple submitters Inborn genetic diseases ⚠
- p.Asp718Asn Multiple submitters Teebi hypertelorism syndrome 2 ⚠
- p.Gly45Arg Multiple submitters Inborn genetic diseases ⚠
- p.Gly618Ser Multiple submitters Inborn genetic diseases ⚠
- p.Ile649Val Multiple submitters Inborn genetic diseases ⚠
- c.1000-22A>G Single submitter Elsahy-Waters syndrome
- c.1895-547del Single submitter
- c.1895-561A>G Single submitter
- c.1895-569dup Single submitter CDH11-related disorder
- c.644-5T>G Single submitter
- c.*239dup Single submitter orofacial cleft 1
- p.Ala461Ser Single submitter ⚠
- p.Ala470Val Single submitter Inborn genetic diseases ⚠
- p.Ala475Thr Single submitter Inborn genetic diseases ⚠
- p.Ala522Ser Single submitter Inborn genetic diseases ⚠
- p.Ala675Gly Single submitter ⚠
- p.Ala675Val Single submitter Inborn genetic diseases ⚠
- p.Ala752Ser Single submitter Inborn genetic diseases ⚠
- p.Arg137Trp Single submitter Elsahy-Waters syndrome ⚠
- p.Arg28Gln Single submitter ⚠
- p.Arg28Trp Single submitter Inborn genetic diseases ⚠
- p.Arg32Trp Single submitter Inborn genetic diseases ⚠
- p.Arg466Gln Single submitter Inborn genetic diseases ⚠
- p.Arg477Lys Single submitter Inborn genetic diseases ⚠
- p.Arg526Lys Single submitter Inborn genetic diseases ⚠
- p.Arg562Gln Single submitter Inborn genetic diseases ⚠
- p.Asn167Thr Single submitter Inborn genetic diseases ⚠
- p.Asn688Asp Single submitter Inborn genetic diseases ⚠
- p.Asp187Gly Single submitter Elsahy-Waters syndrome ⚠
- p.Asp296Asn Single submitter Inborn genetic diseases ⚠
- p.Asp321Tyr Single submitter Inborn genetic diseases ⚠
- p.Asp516His Single submitter Inborn genetic diseases ⚠
- p.Asp596Tyr Single submitter Inborn genetic diseases ⚠
- p.Asp729Glu Single submitter Inborn genetic diseases ⚠
- p.Asp766Asn Single submitter Inborn genetic diseases ⚠
- p.Asp795Asn Single submitter Inborn genetic diseases ⚠
- p.Gln393Glu Single submitter ⚠
- p.Gln393Ter Single submitter Elsahy-Waters syndrome
- p.Gln565Glu Single submitter Inborn genetic diseases ⚠
- p.Glu120Val Single submitter Inborn genetic diseases ⚠
- p.Glu162Lys Single submitter Inborn genetic diseases ⚠
- p.Glu170Gln Single submitter Elsahy-Waters syndrome ⚠
- p.Glu285Gly Single submitter Inborn genetic diseases ⚠
- p.Glu314Gly Single submitter Inborn genetic diseases ⚠
- p.Glu498Val Single submitter ⚠
- p.Gly403Glu Single submitter Inborn genetic diseases ⚠
- p.Gly668Ser Single submitter Elsahy-Waters syndrome ⚠
- p.Gly744Asp Single submitter Inborn genetic diseases ⚠
- p.Gly787Cys Single submitter Inborn genetic diseases ⚠
- p.His36Leu Single submitter Inborn genetic diseases ⚠
- p.His390Gln Single submitter Inborn genetic diseases ⚠
- p.His424Asp Single submitter Inborn genetic diseases ⚠
- p.His464Arg Single submitter Inborn genetic diseases ⚠
- p.His464Tyr Single submitter Elsahy-Waters syndrome ⚠
- p.Ile433Met Single submitter Inborn genetic diseases ⚠
- p.Ile433Val Single submitter Inborn genetic diseases ⚠
- p.Ile528Met Single submitter Inborn genetic diseases ⚠
- p.Ile528Thr Single submitter Inborn genetic diseases ⚠
- p.Ile574Ser Single submitter Inborn genetic diseases ⚠
- p.Ile621Val Single submitter ⚠
- p.Ile627Met Single submitter Inborn genetic diseases ⚠
- p.Ile629Val Single submitter Inborn genetic diseases ⚠
- p.Ile691Val Single submitter Inborn genetic diseases ⚠
- p.Ile91Leu Single submitter Inborn genetic diseases ⚠
- p.Leu302Ile Single submitter Inborn genetic diseases ⚠
- p.Leu648Arg Single submitter ⚠
- p.Lys357Glu Single submitter Inborn genetic diseases ⚠
- p.Lys694Glu Single submitter ⚠
- p.Met241Thr Single submitter ⚠
- p.Met275Arg Single submitter Inborn genetic diseases ⚠
- p.Met382Thr Single submitter Teebi hypertelorism syndrome 2 ⚠
- p.Met703Val Single submitter Inborn genetic diseases ⚠
- p.Phe268Val Single submitter ⚠
- p.Phe35Leu Single submitter Inborn genetic diseases ⚠
- p.Phe690Leu Single submitter Inborn genetic diseases ⚠
- p.Phe792Leu Single submitter Inborn genetic diseases ⚠
- p.Pro156Leu Single submitter Inborn genetic diseases ⚠
- p.Pro189Arg Single submitter Inborn genetic diseases ⚠
- p.Pro269Gln Single submitter ⚠
- p.Pro380Leu Single submitter ⚠
- p.Pro525Arg Single submitter ⚠
- p.Pro525Gln Single submitter Inborn genetic diseases ⚠
- p.Ser271Arg Single submitter Inborn genetic diseases ⚠
- p.Ser373Thr Single submitter ⚠
- p.Ser506Thr Single submitter Inborn genetic diseases ⚠
- p.Ser575Ile Single submitter Inborn genetic diseases ⚠
- p.Thr163Ala Single submitter Inborn genetic diseases ⚠
- p.Thr214Ile Single submitter ⚠
- p.Thr432Ala Single submitter Inborn genetic diseases ⚠
- p.Thr443Ile Single submitter Inborn genetic diseases ⚠
- p.Thr451Ala Single submitter Inborn genetic diseases ⚠
- p.Thr587Ser Single submitter Inborn genetic diseases ⚠
- p.Tyr232His Single submitter Inborn genetic diseases ⚠
- p.Tyr232Phe Single submitter Inborn genetic diseases ⚠
- p.Tyr786Cys Single submitter Inborn genetic diseases ⚠
- p.Val131Met Single submitter Inborn genetic diseases ⚠
- p.Val234Met Single submitter Inborn genetic diseases ⚠
- p.Val235Met Single submitter Inborn genetic diseases ⚠
- p.Val272Ile Single submitter Inborn genetic diseases ⚠
- p.Val287Ala Single submitter ⚠
- p.Val352Met Single submitter Inborn genetic diseases ⚠
- p.Val405Met Single submitter Inborn genetic diseases ⚠
- p.Val592Ile Single submitter Inborn genetic diseases ⚠
- p.Arg657Cys No assertion criteria Teebi hypertelorism syndrome 2 ⚠