CDK10 — 159 ClinVar variants
All ClinVar germline CDK10 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 81 flagged for review →
13 Pathogenic · 6 Pathogenic/Likely pathogenic · 13 Likely pathogenic · 6 Conflicting · 4 Benign · 30 Likely benign · 87 Uncertain significance
Full CDK10 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 81
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
-
CDK10 p.Thr242Ser
Likely pathogenic
Single submitter
Abnormal brain morphology
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
CDK10 p.Arg357His
Conflicting
Single submitter
Al Kaissi syndrome
-
CDK10 p.Pro348Gln
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 63
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- CDK10 p.Arg205Gln Uncertain significance Multiple submitters
-
CDK10 p.Arg345Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CDK10 p.Asp221Asn
Uncertain significance
Multiple submitters
Al Kaissi syndrome
-
CDK10 p.Cys176Ser
Uncertain significance
Multiple submitters
Al Kaissi syndrome
- CDK10 p.Glu231Lys Uncertain significance Multiple submitters
-
CDK10 p.Glu9Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CDK10 p.Leu229Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CDK10 p.Met195Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CDK10 p.Ala2Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Ala2Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Ala347Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg186Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg186Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg278Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- CDK10 p.Arg298His Uncertain significance Single submitter
-
CDK10 p.Arg29Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg32Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg34Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg44Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg71Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Asp173Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Cys33Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Glu294Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- CDK10 p.Glu352Lys Uncertain significance Single submitter
-
CDK10 p.Gly175Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Gly20Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Gly212Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Gly296Arg
Uncertain significance
Single submitter
Al Kaissi syndrome
-
CDK10 p.Gly315Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.His301Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.His95Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Ile220Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Leu13Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Leu148Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Leu277Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Leu285Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Leu6Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Leu93Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Lys14Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Lys68Glu
Uncertain significance
Single submitter
Al Kaissi syndrome
-
CDK10 p.Met117Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Met305Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Phe323Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Pro258Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Pro258Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Pro308Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Pro348Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Pro360Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- CDK10 p.Pro80Leu Uncertain significance Single submitter
-
CDK10 p.Ser126Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Ser136Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Ser219Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Ser355Arg
Uncertain significance
Single submitter
Al Kaissi syndrome
-
CDK10 p.Thr172Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Thr196Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Thr213Ile
Uncertain significance
Single submitter
Al Kaissi syndrome
-
CDK10 p.Thr215Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Thr350Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Thr88Arg
Uncertain significance
Single submitter
Al Kaissi syndrome
-
CDK10 p.Tyr282Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Val199Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Val70Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Val99Leu
Uncertain significance
Single submitter
Al Kaissi syndrome
Predictors split 15
The independent predictors disagree with each other — read with care.
-
CDK10 p.Arg57Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CDK10 p.Val105Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CDK10 p.Ala312Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg149Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg342His
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg357Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Arg94Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Asp77Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Gly189Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Ile64Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Leu148Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Phe182Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Thr179Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Thr313Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CDK10 p.Val99Met
Uncertain significance
Single submitter
Inborn genetic diseases
All CDK10 variants
Pathogenic 13
- c.608+1G>A Multiple submitters Al Kaissi syndrome
- p.Met222fs Multiple submitters Al Kaissi syndrome
- c.161-1G>C Single submitter Al Kaissi syndrome
- c.(87+1_88-1 Single submitter Al Kaissi syndrome
- p.Asn168fs Single submitter Al Kaissi syndrome
- p.Gln60fs Single submitter Inborn genetic diseases
- p.Leu151Pro Single submitter Al Kaissi syndrome
- p.Leu154Pro Single submitter Al Kaissi syndrome
- p.Leu211del Single submitter Al Kaissi syndrome
- p.Leu239fs Single submitter Al Kaissi syndrome
- p.Lys76Ter Single submitter Al Kaissi syndrome
- p.Trp291Ter Single submitter Global developmental delay
- c.88-870_232+368del No assertion criteria Al Kaissi syndrome
Pathogenic/Likely pathogenic 6
- c.609-1G>A Multiple submitters Al Kaissi syndrome
- c.87+5G>A Multiple submitters Al Kaissi syndrome
- p.Cys8Ter Multiple submitters Al Kaissi syndrome
- p.Glu244fs Multiple submitters Al Kaissi syndrome
- p.Lys174fs Multiple submitters Al Kaissi syndrome
- p.Trp291fs Multiple submitters Inborn genetic diseases
Likely pathogenic 13
- c.161-2A>G Single submitter Al Kaissi syndrome
- c.232+1G>C Single submitter Al Kaissi syndrome
- p.Arg205Ter Single submitter Al Kaissi syndrome
- p.Glu47fs Single submitter Al Kaissi syndrome
- p.Leu101fs Single submitter Al Kaissi syndrome
- p.Leu184fs Single submitter Al Kaissi syndrome
- p.Leu299fs Single submitter Al Kaissi syndrome
- p.Lys68Ter Single submitter
- p.Ser136Ter Single submitter Al Kaissi syndrome
- p.Thr242Ser Single submitter Abnormal brain morphology ⚠
- p.Tyr119Ter Single submitter Al Kaissi syndrome
- p.Tyr282Ter Single submitter Al Kaissi syndrome
- p.Trp223Ter No assertion criteria Al Kaissi syndrome
Conflicting classifications of pathogenicity 6
- c.233-8C>T Single submitter
- c.609-4G>T Single submitter Inborn genetic diseases
- p.Arg17= Single submitter Al Kaissi syndrome
- p.Arg357His Single submitter Al Kaissi syndrome ⚠
- p.Pro264= Single submitter Al Kaissi syndrome
- p.Pro348Gln Single submitter Inborn genetic diseases ⚠
Benign 4
- c.485+49A>G Multiple submitters Al Kaissi syndrome
- c.609-29T>C Multiple submitters Al Kaissi syndrome
- c.792+19CCCGCAGCCCCCGCCCGTGCCCACGCCCTCTGCG[2] Single submitter
- p.Gln274= Single submitter
Likely benign 30
- p.Ala314= Multiple submitters
- c.336-7del Single submitter
- c.485+7G>C Single submitter
- c.539-8T>C Single submitter
- c.608+10_608+12del Single submitter
- c.792+7G>A Single submitter
- c.932+17G>C Single submitter
- c.932+22dup Single submitter
- c.985+7G>A Single submitter
- p.Ala312= Single submitter
- p.Ala347Thr Single submitter
- p.Arg236Lys Single submitter Inborn genetic diseases
- p.Cys358Tyr Single submitter
- p.Glu331= Single submitter
- p.Ile143= Single submitter
- p.Ile248= Single submitter
- p.Leu239= Single submitter
- p.Lys174Asn Single submitter Inborn genetic diseases
- p.Pro4= Single submitter
- p.Pro4Ala Single submitter
- p.Pro96= Single submitter
- p.Thr215= Single submitter
- p.Val190= Single submitter
- c.417+5G>A No assertion criteria CDK10-related disorder
- c.609-7T>G No assertion criteria CDK10-related disorder
- c.*82G>A No assertion criteria CDK10-related disorder
- c.*90G>A No assertion criteria CDK10-related disorder
- p.Phe158= No assertion criteria CDK10-related disorder
- p.Phe182= No assertion criteria CDK10-related disorder
- p.Ter361= No assertion criteria CDK10-related disorder
Uncertain significance 87
- p.Arg205Gln Multiple submitters ⚠
- p.Arg345Gln Multiple submitters Inborn genetic diseases ⚠
- p.Arg57Gln Multiple submitters Inborn genetic diseases ⚠
- p.Arg57Trp Multiple submitters Inborn genetic diseases
- p.Asp221Asn Multiple submitters Al Kaissi syndrome ⚠
- p.Cys176Ser Multiple submitters Al Kaissi syndrome ⚠
- p.Glu231Lys Multiple submitters ⚠
- p.Glu9Gln Multiple submitters Inborn genetic diseases ⚠
- p.Leu229Val Multiple submitters Inborn genetic diseases ⚠
- p.Leu269Val Multiple submitters Inborn genetic diseases
- p.Met195Val Multiple submitters Inborn genetic diseases ⚠
- p.Val105Ile Multiple submitters Inborn genetic diseases ⚠
- c.793-3T>C Single submitter Inborn genetic diseases
- c.985+6T>C Single submitter Inborn genetic diseases
- p.Ala2Thr Single submitter Inborn genetic diseases ⚠
- p.Ala2Val Single submitter Inborn genetic diseases ⚠
- p.Ala312Val Single submitter Inborn genetic diseases ⚠
- p.Ala347Val Single submitter Inborn genetic diseases ⚠
- p.Arg149Trp Single submitter Inborn genetic diseases ⚠
- p.Arg186Gly Single submitter Inborn genetic diseases ⚠
- p.Arg186Trp Single submitter Inborn genetic diseases ⚠
- p.Arg278Gln Single submitter Inborn genetic diseases ⚠
- p.Arg298His Single submitter ⚠
- p.Arg29Lys Single submitter Inborn genetic diseases ⚠
- p.Arg32Gln Single submitter Inborn genetic diseases ⚠
- p.Arg342His Single submitter Inborn genetic diseases ⚠
- p.Arg34Gln Single submitter Inborn genetic diseases ⚠
- p.Arg357Cys Single submitter Inborn genetic diseases ⚠
- p.Arg44Cys Single submitter Inborn genetic diseases ⚠
- p.Arg71Trp Single submitter Inborn genetic diseases ⚠
- p.Arg94Cys Single submitter Inborn genetic diseases ⚠
- p.Asp173Asn Single submitter Inborn genetic diseases ⚠
- p.Asp77Gly Single submitter Inborn genetic diseases ⚠
- p.Cys33Tyr Single submitter Inborn genetic diseases ⚠
- p.Cys8= Single submitter Inborn genetic diseases
- p.Glu294Asp Single submitter Inborn genetic diseases ⚠
- p.Glu352Lys Single submitter ⚠
- p.Gly175Ser Single submitter Inborn genetic diseases ⚠
- p.Gly189Ala Single submitter Inborn genetic diseases ⚠
- p.Gly20Ala Single submitter Inborn genetic diseases ⚠
- p.Gly212Glu Single submitter Inborn genetic diseases ⚠
- p.Gly296Arg Single submitter Al Kaissi syndrome ⚠
- p.Gly315Glu Single submitter Inborn genetic diseases ⚠
- p.His301Pro Single submitter Inborn genetic diseases ⚠
- p.His95Arg Single submitter Inborn genetic diseases ⚠
- p.Ile220Val Single submitter Inborn genetic diseases ⚠
- p.Ile228Met Single submitter Al Kaissi syndrome
- p.Ile64Thr Single submitter Inborn genetic diseases ⚠
- p.Leu13Met Single submitter Inborn genetic diseases ⚠
- p.Leu148Phe Single submitter Inborn genetic diseases ⚠
- p.Leu148Pro Single submitter Inborn genetic diseases ⚠
- p.Leu277Phe Single submitter Inborn genetic diseases ⚠
- p.Leu285Met Single submitter Inborn genetic diseases ⚠
- p.Leu318Arg Single submitter Inborn genetic diseases
- p.Leu6Arg Single submitter Inborn genetic diseases ⚠
- p.Leu93Pro Single submitter Inborn genetic diseases ⚠
- p.Lys14Arg Single submitter Inborn genetic diseases ⚠
- p.Lys68Glu Single submitter Al Kaissi syndrome ⚠
- p.Lys69del Single submitter Al Kaissi syndrome
- p.Met117Thr Single submitter Inborn genetic diseases ⚠
- p.Met305Thr Single submitter Inborn genetic diseases ⚠
- p.Phe182Leu Single submitter Inborn genetic diseases ⚠
- p.Phe323Ile Single submitter Inborn genetic diseases ⚠
- p.Pro258Ala Single submitter Inborn genetic diseases ⚠
- p.Pro258Ser Single submitter Inborn genetic diseases ⚠
- p.Pro308Leu Single submitter Inborn genetic diseases ⚠
- p.Pro332Leu Single submitter Inborn genetic diseases
- p.Pro348Ser Single submitter Inborn genetic diseases ⚠
- p.Pro360Thr Single submitter Inborn genetic diseases ⚠
- p.Pro80Leu Single submitter ⚠
- p.Ser126Ile Single submitter Inborn genetic diseases ⚠
- p.Ser136Leu Single submitter Inborn genetic diseases ⚠
- p.Ser219Asn Single submitter Inborn genetic diseases ⚠
- p.Ser355Arg Single submitter Al Kaissi syndrome ⚠
- p.Thr172Ala Single submitter Inborn genetic diseases ⚠
- p.Thr179Arg Single submitter Inborn genetic diseases ⚠
- p.Thr196Ile Single submitter Inborn genetic diseases ⚠
- p.Thr213Ile Single submitter Al Kaissi syndrome ⚠
- p.Thr215Met Single submitter Inborn genetic diseases ⚠
- p.Thr313Met Single submitter Inborn genetic diseases ⚠
- p.Thr350Ile Single submitter Inborn genetic diseases ⚠
- p.Thr88Arg Single submitter Al Kaissi syndrome ⚠
- p.Tyr282Asn Single submitter Inborn genetic diseases ⚠
- p.Val199Ala Single submitter Inborn genetic diseases ⚠
- p.Val70Met Single submitter Inborn genetic diseases ⚠
- p.Val99Leu Single submitter Al Kaissi syndrome ⚠
- p.Val99Met Single submitter Inborn genetic diseases ⚠