CEBPA — 1096 ClinVar variants

All ClinVar germline CEBPA variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 650 flagged for review →

37 Pathogenic · 1 Pathogenic/Likely pathogenic · 20 Likely pathogenic · 111 Conflicting · 4 Benign · 3 Benign/Likely benign · 258 Likely benign · 662 Uncertain significance

Full CEBPA gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 650

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 4

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 37

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 251

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 251

Predictors split 358

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 358

All CEBPA variants

Pathogenic 37

Pathogenic/Likely pathogenic 1

  • p.Gln83fs Multiple submitters acute myeloid leukemia

Likely pathogenic 20

Conflicting classifications of pathogenicity 111

Benign 4

  • c.-110C>T Multiple submitters
  • p.Ala271Pro Multiple submitters Inborn genetic diseases
  • p.His191= Multiple submitters Inborn genetic diseases
  • p.Thr230= Multiple submitters Inborn genetic diseases

Benign/Likely benign 3

  • p.Glu347= Multiple submitters Inborn genetic diseases
  • p.Pro187= Multiple submitters acute myeloid leukemia
  • p.Pro247= Multiple submitters Inborn genetic diseases

Likely benign 258

  • c.*302C>T Multiple submitters
  • p.Ala124= Multiple submitters Inborn genetic diseases
  • p.Ala136= Multiple submitters Inborn genetic diseases
  • p.Ala170= Multiple submitters Inborn genetic diseases
  • p.Ala174= Multiple submitters Inborn genetic diseases
  • p.Ala176= Multiple submitters acute myeloid leukemia
  • p.Ala199= Multiple submitters acute myeloid leukemia
  • p.Ala203= Multiple submitters Inborn genetic diseases
  • p.Ala211= Multiple submitters acute myeloid leukemia
  • p.Ala240= Multiple submitters acute myeloid leukemia
  • p.Ala259= Multiple submitters Inborn genetic diseases
  • p.Ala274= Multiple submitters Inborn genetic diseases
  • p.Ala29= Multiple submitters acute myeloid leukemia
  • p.Ala30= Multiple submitters acute myeloid leukemia
  • p.Ala303= Multiple submitters acute myeloid leukemia
  • p.Ala358= Multiple submitters Inborn genetic diseases
  • p.Ala40= Multiple submitters Inborn genetic diseases
  • p.Ala93= Multiple submitters Inborn genetic diseases
  • p.Ala94= Multiple submitters acute myeloid leukemia
  • p.Arg12= Multiple submitters Inborn genetic diseases
  • p.Arg149= Multiple submitters Inborn genetic diseases
  • p.Arg156= Multiple submitters Inborn genetic diseases
  • p.Arg264= Multiple submitters acute myeloid leukemia
  • p.Arg286= Multiple submitters Inborn genetic diseases
  • p.Arg288= Multiple submitters Inborn genetic diseases
  • p.Arg300= Multiple submitters acute myeloid leukemia
  • p.Arg339= Multiple submitters Inborn genetic diseases
  • p.Arg35= Multiple submitters Inborn genetic diseases
  • p.Asn307= Multiple submitters acute myeloid leukemia
  • p.Asp168= Multiple submitters Inborn genetic diseases
  • p.Asp262= Multiple submitters acute myeloid leukemia
  • p.Asp279= Multiple submitters Inborn genetic diseases
  • p.Asp320= Multiple submitters Inborn genetic diseases
  • p.Asp322= Multiple submitters Inborn genetic diseases
  • p.Asp336= Multiple submitters Inborn genetic diseases
  • p.Cys133= Multiple submitters Inborn genetic diseases
  • p.Gln182= Multiple submitters acute myeloid leukemia
  • p.Gln215= Multiple submitters Inborn genetic diseases
  • p.Glu167= Multiple submitters Inborn genetic diseases
  • p.Glu169= Multiple submitters Inborn genetic diseases
  • p.Glu309= Multiple submitters Inborn genetic diseases
  • p.Gly102= Multiple submitters Inborn genetic diseases
  • p.Gly116= Multiple submitters Inborn genetic diseases
  • p.Gly122= Multiple submitters acute myeloid leukemia
  • p.Gly126= Multiple submitters acute myeloid leukemia
  • p.Gly151= Multiple submitters Inborn genetic diseases
  • p.Gly177= Multiple submitters Inborn genetic diseases
  • p.Gly223= Multiple submitters acute myeloid leukemia
  • p.Gly250= Multiple submitters Inborn genetic diseases
  • p.Gly268= Multiple submitters Inborn genetic diseases
  • p.Gly36= Multiple submitters acute myeloid leukemia
  • p.Gly96= Multiple submitters Inborn genetic diseases
  • p.Gly99= Multiple submitters Inborn genetic diseases
  • p.His125= Multiple submitters acute myeloid leukemia
  • p.His195= Multiple submitters Inborn genetic diseases
  • p.His212= Multiple submitters Inborn genetic diseases
  • p.His58= Multiple submitters Inborn genetic diseases
  • p.His84= Multiple submitters acute myeloid leukemia
  • p.Leu139= Multiple submitters acute myeloid leukemia
  • p.Leu143= Multiple submitters Inborn genetic diseases
  • p.Leu175= Multiple submitters acute myeloid leukemia
  • p.Leu178= Multiple submitters acute myeloid leukemia
  • p.Leu19= Multiple submitters acute myeloid leukemia
  • p.Leu201= Multiple submitters acute myeloid leukemia
  • p.Leu220= Multiple submitters Inborn genetic diseases
  • p.Leu246= Multiple submitters acute myeloid leukemia
  • p.Leu256= Multiple submitters Inborn genetic diseases
  • p.Leu263= Multiple submitters Inborn genetic diseases
  • p.Leu315= Multiple submitters Inborn genetic diseases
  • p.Leu350= Multiple submitters Inborn genetic diseases
  • p.Leu52= Multiple submitters acute myeloid leukemia
  • p.Lys254= Multiple submitters Inborn genetic diseases
  • p.Lys273= Multiple submitters Inborn genetic diseases
  • p.Lys313= Multiple submitters Inborn genetic diseases
  • p.Lys90= Multiple submitters Inborn genetic diseases
  • p.Phe106= Multiple submitters Inborn genetic diseases
  • p.Phe6= Multiple submitters acute myeloid leukemia
  • p.Phe77= Multiple submitters Inborn genetic diseases
  • p.Pro11= Multiple submitters acute myeloid leukemia
  • p.Pro112= Multiple submitters Inborn genetic diseases
  • p.Pro115= Multiple submitters Inborn genetic diseases
  • p.Pro121= Multiple submitters Inborn genetic diseases
  • p.Pro128= Multiple submitters Inborn genetic diseases
  • p.Pro13= Multiple submitters Inborn genetic diseases
  • p.Pro14= Multiple submitters Inborn genetic diseases
  • p.Pro153= Multiple submitters acute myeloid leukemia
  • p.Pro183Thr Multiple submitters Inborn genetic diseases ⚠
  • p.Pro186= Multiple submitters Inborn genetic diseases
  • p.Pro192= Multiple submitters Inborn genetic diseases
  • p.Pro194= Multiple submitters Inborn genetic diseases
  • p.Pro196= Multiple submitters acute myeloid leukemia
  • p.Pro204= Multiple submitters Inborn genetic diseases
  • p.Pro22= Multiple submitters Inborn genetic diseases
  • p.Pro225= Multiple submitters acute myeloid leukemia
  • p.Pro235= Multiple submitters acute myeloid leukemia
  • p.Pro249= Multiple submitters acute myeloid leukemia
  • p.Pro261= Multiple submitters acute myeloid leukemia
  • p.Pro34= Multiple submitters Inborn genetic diseases
  • p.Pro43= Multiple submitters Inborn genetic diseases
  • p.Pro49= Multiple submitters Inborn genetic diseases
  • p.Pro51= Multiple submitters Inborn genetic diseases
  • p.Ser21= Multiple submitters Inborn genetic diseases
  • p.Ser266= Multiple submitters Inborn genetic diseases
  • p.Ser27= Multiple submitters acute myeloid leukemia
  • p.Ser299= Multiple submitters Inborn genetic diseases
  • p.Ser349= Multiple submitters Inborn genetic diseases
  • p.Ser61= Multiple submitters Inborn genetic diseases
  • p.Thr318= Multiple submitters Inborn genetic diseases
  • p.Thr60= Multiple submitters Inborn genetic diseases
  • p.Thr98= Multiple submitters acute myeloid leukemia
  • p.Tyr138= Multiple submitters acute myeloid leukemia
  • p.Tyr147= Multiple submitters acute myeloid leukemia
  • p.Val119= Multiple submitters Inborn genetic diseases
  • p.Val150= Multiple submitters acute myeloid leukemia
  • p.Val159= Multiple submitters acute myeloid leukemia
  • p.Val232= Multiple submitters Inborn genetic diseases
  • p.Val287= Multiple submitters Inborn genetic diseases
  • p.Val296= Multiple submitters Inborn genetic diseases
  • p.Val95= Multiple submitters Inborn genetic diseases
  • p.Ala111= Single submitter acute myeloid leukemia
  • p.Ala113= Single submitter acute myeloid leukemia
  • p.Ala118= Single submitter acute myeloid leukemia
  • p.Ala135= Single submitter acute myeloid leukemia
  • p.Ala154= Single submitter acute myeloid leukemia
  • p.Ala238= Single submitter acute myeloid leukemia
  • p.Ala243= Single submitter acute myeloid leukemia
  • p.Ala25= Single submitter acute myeloid leukemia
  • p.Ala252= Single submitter acute myeloid leukemia
  • p.Ala258= Single submitter acute myeloid leukemia
  • p.Ala271= Single submitter Inborn genetic diseases
  • p.Ala295= Single submitter acute myeloid leukemia
  • p.Ala29Gly Single submitter Inborn genetic diseases
  • p.Ala353= Single submitter acute myeloid leukemia
  • p.Ala37= Single submitter acute myeloid leukemia
  • p.Ala44= Single submitter acute myeloid leukemia
  • p.Ala47= Single submitter acute myeloid leukemia
  • p.Ala48= Single submitter acute myeloid leukemia
  • p.Ala4Val Single submitter Inborn genetic diseases
  • p.Ala71= Single submitter acute myeloid leukemia
  • p.Ala72= Single submitter acute myeloid leukemia
  • p.Ala79= Single submitter acute myeloid leukemia
  • p.Arg289= Single submitter Inborn genetic diseases
  • p.Arg333= Single submitter acute myeloid leukemia
  • p.Arg343= Single submitter Inborn genetic diseases
  • p.Arg35Gly Single submitter Inborn genetic diseases
  • p.Asn281= Single submitter Inborn genetic diseases
  • p.Asn321= Single submitter acute myeloid leukemia
  • p.Asn356= Single submitter Inborn genetic diseases
  • p.Asn74= Single submitter acute myeloid leukemia
  • p.Asp105= Single submitter acute myeloid leukemia
  • p.Asp107= Single submitter Inborn genetic diseases
  • p.Asp140= Single submitter acute myeloid leukemia
  • p.Asp63= Single submitter Inborn genetic diseases
  • p.Asp80= Single submitter acute myeloid leukemia
  • p.Cys213= Single submitter Inborn genetic diseases
  • p.Cys357= Single submitter acute myeloid leukemia
  • p.Gln207= Single submitter acute myeloid leukemia
  • p.Gln311= Single submitter Inborn genetic diseases
  • p.Gln330= Single submitter acute myeloid leukemia
  • p.Gln344= Single submitter acute myeloid leukemia
  • p.Gln83= Single submitter Inborn genetic diseases
  • p.Gln87= Single submitter acute myeloid leukemia
  • p.Gln87Arg Single submitter Inborn genetic diseases
  • p.Glu10= Single submitter Inborn genetic diseases
  • p.Glu148= Single submitter Inborn genetic diseases
  • p.Glu148Gln Single submitter Inborn genetic diseases
  • p.Glu284= Single submitter acute myeloid leukemia
  • p.Glu316= Single submitter acute myeloid leukemia
  • p.Glu329= Single submitter acute myeloid leukemia
  • p.Glu57= Single submitter Inborn genetic diseases
  • p.Glu59= Single submitter acute myeloid leukemia
  • p.Gly103= Single submitter Inborn genetic diseases
  • p.Gly104= Single submitter acute myeloid leukemia
  • p.Gly110= Single submitter acute myeloid leukemia
  • p.Gly110Val Single submitter Inborn genetic diseases ⚠
  • p.Gly114= Single submitter Inborn genetic diseases
  • p.Gly137= Single submitter acute myeloid leukemia
  • p.Gly214= Single submitter Inborn genetic diseases
  • p.Gly214Val Single submitter Inborn genetic diseases
  • p.Gly242= Single submitter Inborn genetic diseases
  • p.Gly255= Single submitter Inborn genetic diseases
  • p.Gly257= Single submitter Inborn genetic diseases
  • p.Gly340= Single submitter acute myeloid leukemia
  • p.Gly36Val Single submitter Inborn genetic diseases ⚠
  • p.Gly38= Single submitter acute myeloid leukemia
  • p.Gly53= Single submitter Inborn genetic diseases
  • p.Gly54= Single submitter acute myeloid leukemia
  • p.Gly96Ala Single submitter Inborn genetic diseases
  • p.His205= Single submitter Inborn genetic diseases
  • p.His219= Single submitter Inborn genetic diseases
  • p.His24= Single submitter Inborn genetic diseases
  • p.His260= Single submitter acute myeloid leukemia
  • p.His58Arg Single submitter Inborn genetic diseases ⚠
  • p.Ile210= Single submitter Inborn genetic diseases
  • p.Ile294= Single submitter acute myeloid leukemia
  • p.Ile55= Single submitter acute myeloid leukemia
  • p.Ile55Val Single submitter Inborn genetic diseases ⚠
  • p.Ile62= Single submitter acute myeloid leukemia
  • p.Leu146= Single submitter acute myeloid leukemia
  • p.Leu158= Single submitter Inborn genetic diseases
  • p.Leu206= Single submitter Inborn genetic diseases
  • p.Leu241= Single submitter acute myeloid leukemia
  • p.Leu253= Single submitter Inborn genetic diseases
  • p.Leu317= Single submitter acute myeloid leukemia
  • p.Leu324= Single submitter acute myeloid leukemia
  • p.Leu331= Single submitter Inborn genetic diseases
  • p.Leu78= Single submitter Inborn genetic diseases
  • p.Lys276= Single submitter Inborn genetic diseases
  • p.Lys298= Single submitter acute myeloid leukemia
  • p.Lys304= Single submitter acute myeloid leukemia
  • p.Lys326= Single submitter acute myeloid leukemia
  • p.Phe179= Single submitter Inborn genetic diseases
  • p.Phe82= Single submitter Inborn genetic diseases
  • p.Pro109= Single submitter acute myeloid leukemia
  • p.Pro127= Single submitter Inborn genetic diseases
  • p.Pro164= Single submitter Inborn genetic diseases
  • p.Pro180= Single submitter Inborn genetic diseases
  • p.Pro183= Single submitter Inborn genetic diseases
  • p.Pro185= Single submitter acute myeloid leukemia
  • p.Pro188= Single submitter Inborn genetic diseases
  • p.Pro188Arg Single submitter Inborn genetic diseases
  • p.Pro189= Single submitter acute myeloid leukemia
  • p.Pro197= Single submitter acute myeloid leukemia
  • p.Pro198= Single submitter acute myeloid leukemia
  • p.Pro222= Single submitter acute myeloid leukemia
  • p.Pro227= Single submitter Inborn genetic diseases
  • p.Pro228= Single submitter acute myeloid leukemia
  • p.Pro23= Single submitter Inborn genetic diseases
  • p.Pro231= Single submitter acute myeloid leukemia
  • p.Pro233= Single submitter acute myeloid leukemia
  • p.Pro237= Single submitter acute myeloid leukemia
  • p.Pro239= Single submitter acute myeloid leukemia
  • p.Pro247Arg Single submitter Inborn genetic diseases ⚠
  • p.Pro247Leu Single submitter Inborn genetic diseases
  • p.Pro39Ser Single submitter Inborn genetic diseases ⚠
  • p.Pro42= Single submitter Inborn genetic diseases
  • p.Pro45Ser Single submitter Inborn genetic diseases ⚠
  • p.Pro46= Single submitter acute myeloid leukemia
  • p.Pro70= Single submitter acute myeloid leukemia
  • p.Ser190= Single submitter acute myeloid leukemia
  • p.Ser234= Single submitter Inborn genetic diseases
  • p.Ser251= Single submitter Inborn genetic diseases
  • p.Ser269= Single submitter Inborn genetic diseases
  • p.Ser269Gly Single submitter Inborn genetic diseases
  • p.Ser277= Single submitter acute myeloid leukemia
  • p.Ser28= Single submitter acute myeloid leukemia
  • p.Ser282= Single submitter acute myeloid leukemia
  • p.Ser3= Single submitter acute myeloid leukemia
  • p.Thr216= Single submitter acute myeloid leukemia
  • p.Thr226= Single submitter acute myeloid leukemia
  • p.Tyr181Cys Single submitter Inborn genetic diseases ⚠
  • p.Val278= Single submitter Inborn genetic diseases
  • p.Val308= Single submitter acute myeloid leukemia
  • p.Val95Ala Single submitter Inborn genetic diseases
  • c.-97G>T No assertion criteria CEBPA-related disorder
  • p.Gly123= No assertion criteria CEBPA-related disorder
  • p.Gly245= No assertion criteria CEBPA-related disorder
  • p.Pro129= No assertion criteria CEBPA-related disorder

Uncertain significance 662

Showing the top 300 by review status; the full set is in the sitemap.