CEBPE — 235 ClinVar variants

All ClinVar germline CEBPE variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 119 flagged for review →

9 Pathogenic · 1 Pathogenic/Likely pathogenic · 1 Likely pathogenic · 2 Conflicting · 7 Benign · 4 Benign/Likely benign · 88 Likely benign · 123 Uncertain significance

Full CEBPE gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 119

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 1

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 74

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 44

The independent predictors disagree with each other — read with care.

All CEBPE variants

Pathogenic 9

  • p.Arg131Ter Single submitter specific granule deficiency
  • p.Arg135Ter Single submitter specific granule deficiency
  • p.Gly68fs Single submitter specific granule deficiency
  • p.Tyr7fs Single submitter specific granule deficiency
  • p.Ala171fs No assertion criteria specific granule deficiency 1
  • p.Arg219His No assertion criteria Pelger-Huet-like anomaly and episodic fever with abdominal pain
  • p.Asp84fs No assertion criteria specific granule deficiency 1
  • p.Lys220fs No assertion criteria specific granule deficiency 1
  • p.Ser248_Arg249del No assertion criteria specific granule deficiency 1

Pathogenic/Likely pathogenic 1

  • p.Arg24Ter Multiple submitters specific granule deficiency

Likely pathogenic 1

  • p.Val218Ala Single submitter specific granule deficiency 1

Conflicting classifications of pathogenicity 2

Benign 7

  • c.511-15T>G Multiple submitters specific granule deficiency
  • c.511-24G>A Multiple submitters specific granule deficiency
  • p.Arg249= Multiple submitters specific granule deficiency
  • c.-20G>A Single submitter
  • c.*15T>C Single submitter
  • p.Arg12Trp Single submitter specific granule deficiency ⚠
  • p.Pro75= Single submitter specific granule deficiency

Benign/Likely benign 4

  • p.Ala186= Multiple submitters specific granule deficiency
  • p.Leu155Met Multiple submitters specific granule deficiency ⚠
  • p.Pro162= Multiple submitters specific granule deficiency
  • p.Pro78= Multiple submitters specific granule deficiency

Likely benign 88

  • p.Arg12Gln Multiple submitters specific granule deficiency
  • p.Gly276= Multiple submitters specific granule deficiency
  • p.Ile46= Multiple submitters specific granule deficiency
  • p.Ser43= Multiple submitters specific granule deficiency
  • c.510+10G>A Single submitter specific granule deficiency
  • c.510+15G>A Single submitter specific granule deficiency
  • c.510+16C>A Single submitter specific granule deficiency
  • c.510+17C>T Single submitter specific granule deficiency
  • c.510+18C>T Single submitter specific granule deficiency
  • c.510+8C>G Single submitter specific granule deficiency
  • c.511-13C>G Single submitter specific granule deficiency
  • c.511-17C>T Single submitter specific granule deficiency
  • c.511-20C>G Single submitter specific granule deficiency
  • c.511-24_511-19dup Single submitter specific granule deficiency
  • c.511-7C>T Single submitter specific granule deficiency
  • c.511-9C>G Single submitter specific granule deficiency
  • c.511-9C>T Single submitter specific granule deficiency
  • c.-7del Single submitter
  • p.Ala101= Single submitter specific granule deficiency
  • p.Ala117= Single submitter specific granule deficiency
  • p.Ala119= Single submitter specific granule deficiency
  • p.Ala133= Single submitter specific granule deficiency
  • p.Ala174= Single submitter specific granule deficiency
  • p.Ala176= Single submitter specific granule deficiency
  • p.Ala217= Single submitter specific granule deficiency
  • p.Ala241= Single submitter specific granule deficiency
  • p.Ala270= Single submitter specific granule deficiency
  • p.Ala271= Single submitter specific granule deficiency
  • p.Ala59= Single submitter specific granule deficiency
  • p.Ala63= Single submitter specific granule deficiency
  • p.Ala76= Single submitter specific granule deficiency
  • p.Arg125= Single submitter specific granule deficiency
  • p.Arg167= Single submitter specific granule deficiency
  • p.Arg208= Single submitter specific granule deficiency
  • p.Arg265= Single submitter specific granule deficiency
  • p.Asn201= Single submitter specific granule deficiency
  • p.Asn214= Single submitter specific granule deficiency
  • p.Asn215= Single submitter specific granule deficiency
  • p.Asn243= Single submitter specific granule deficiency
  • p.Asn262= Single submitter specific granule deficiency
  • p.Asp203= Single submitter specific granule deficiency
  • p.Asp223= Single submitter specific granule deficiency
  • p.Cys148= Single submitter specific granule deficiency
  • p.Gln16= Single submitter specific granule deficiency
  • p.Gln266= Single submitter specific granule deficiency
  • p.Gln52= Single submitter specific granule deficiency
  • p.Glu212= Single submitter specific granule deficiency
  • p.Glu238= Single submitter specific granule deficiency
  • p.Gly14= Single submitter specific granule deficiency
  • p.Gly191= Single submitter specific granule deficiency
  • p.Gly22= Single submitter specific granule deficiency
  • p.Gly71= Single submitter specific granule deficiency
  • p.His3= Single submitter specific granule deficiency
  • p.His93= Single submitter specific granule deficiency
  • p.Leu18= Single submitter specific granule deficiency
  • p.Leu209= Single submitter specific granule deficiency
  • p.Leu237= Single submitter specific granule deficiency
  • p.Leu263= Single submitter specific granule deficiency
  • p.Leu273= Single submitter specific granule deficiency
  • p.Leu53= Single submitter specific granule deficiency
  • p.Leu57= Single submitter specific granule deficiency
  • p.Leu69= Single submitter specific granule deficiency
  • p.Lys100= Single submitter specific granule deficiency
  • p.Lys185= Single submitter specific granule deficiency
  • p.Pro110= Single submitter specific granule deficiency
  • p.Pro178= Single submitter specific granule deficiency
  • p.Pro179= Single submitter specific granule deficiency
  • p.Pro182= Single submitter specific granule deficiency
  • p.Pro189= Single submitter specific granule deficiency
  • p.Pro268= Single submitter specific granule deficiency
  • p.Pro27= Single submitter specific granule deficiency
  • p.Pro72= Single submitter specific granule deficiency
  • p.Pro83= Single submitter specific granule deficiency
  • p.Ser188= Single submitter specific granule deficiency
  • p.Ser55= Single submitter specific granule deficiency
  • p.Thr158= Single submitter specific granule deficiency
  • p.Thr175= Single submitter specific granule deficiency
  • p.Thr74= Single submitter specific granule deficiency
  • p.Tyr113= Single submitter specific granule deficiency
  • p.Tyr6= Single submitter specific granule deficiency
  • p.Tyr7= Single submitter specific granule deficiency
  • p.Tyr80= Single submitter specific granule deficiency
  • p.Tyr90= Single submitter specific granule deficiency
  • p.Val118= Single submitter
  • p.Val120= Single submitter specific granule deficiency
  • p.Val145= Single submitter specific granule deficiency
  • p.Val168= Single submitter specific granule deficiency
  • p.Val277= Single submitter specific granule deficiency

Uncertain significance 123