CEP104 — 621 ClinVar variants

All ClinVar germline CEP104 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 222 flagged for review →

17 Pathogenic · 7 Pathogenic/Likely pathogenic · 21 Likely pathogenic · 19 Conflicting · 129 Benign · 19 Benign/Likely benign · 199 Likely benign · 210 Uncertain significance

Full CEP104 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 222

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 14

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 137

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 71

The independent predictors disagree with each other — read with care.

All CEP104 variants

Pathogenic 17

  • p.Gln694fs Multiple submitters Joubert syndrome 25
  • c.2364+1G>A Single submitter Joubert syndrome and related disorders
  • c.735+2T>C Single submitter Joubert syndrome 25
  • p.Arg215Ter Single submitter Joubert syndrome and related disorders
  • p.Arg451Ter Single submitter Joubert syndrome 25
  • p.Arg53Ter Single submitter Joubert syndrome 25
  • p.Asp17fs Single submitter
  • p.Gly411fs Single submitter Joubert syndrome and related disorders
  • p.His582fs Single submitter Joubert syndrome 25
  • p.Lys344fs Single submitter Joubert syndrome 25
  • p.Pro361fs Single submitter Joubert syndrome 25
  • c.2572-2A>G No assertion criteria Joubert syndrome 25
  • p.Arg166Ter No assertion criteria Joubert syndrome 25
  • p.Cys786fs No assertion criteria intellectual developmental disorder, autosomal recessive 77
  • p.Leu634fs No assertion criteria intellectual developmental disorder, autosomal recessive 77
  • p.Thr30fs No assertion criteria cerebellar ataxia
  • p.Tyr444fs No assertion criteria Joubert syndrome 25

Pathogenic/Likely pathogenic 7

Likely pathogenic 21

  • c.1485+1G>A Multiple submitters Joubert syndrome and related disorders
  • p.Glu762fs Multiple submitters Joubert syndrome 25
  • c.1317+1del Single submitter Joubert syndrome and related disorders
  • c.1317+2T>G Single submitter Joubert syndrome 25
  • c.1659+1G>A Single submitter Joubert syndrome 25
  • c.2151+2T>C Single submitter Joubert syndrome 25
  • c.2188+1G>T Single submitter Joubert syndrome 25
  • c.2365-2A>G Single submitter Joubert syndrome 25
  • c.735+1G>T Single submitter Joubert syndrome 25
  • c.891+1G>A Single submitter Joubert syndrome and related disorders
  • p.Ala310fs Single submitter Joubert syndrome and related disorders
  • p.Cys54Ter Single submitter Joubert syndrome and related disorders
  • p.Glu521Ter Single submitter CEP104-related disorder
  • p.Glu697fs Single submitter Joubert syndrome 25
  • p.His830fs Single submitter
  • p.Leu414Ter Single submitter autism spectrum disorder
  • p.Leu61fs Single submitter Joubert syndrome and related disorders
  • p.Lys787fs Single submitter Joubert syndrome 25
  • p.Ser323Ter Single submitter Joubert syndrome 25
  • p.Tyr623fs Single submitter Joubert syndrome and related disorders
  • p.Gln886Ter No assertion criteria CEP104-related disorder

Conflicting classifications of pathogenicity 19

Benign 129

Benign/Likely benign 19

Likely benign 199

Uncertain significance 210