CERS3 — 155 ClinVar variants
All ClinVar germline CERS3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 48 flagged for review →
7 Pathogenic · 14 Likely pathogenic · 5 Conflicting · 46 Benign · 3 Benign/Likely benign · 32 Likely benign · 48 Uncertain significance
Full CERS3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 48
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 4
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
- CERS3 p.Arg370Ser Conflicting Single submitter
-
CERS3 p.Arg54His
Conflicting
Single submitter
Inborn genetic diseases
-
CERS3 p.Gly368Ser
Conflicting
Single submitter
Inborn genetic diseases
-
CERS3 p.Val237Leu
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 31
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
CERS3 p.Arg275Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CERS3 p.Ser177Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CERS3 p.Ala151Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Ala46Asp
Uncertain significance
Single submitter
Ichthyosis and erythrokeratoderma
-
CERS3 p.Arg111Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Arg128Met
Uncertain significance
Single submitter
Inborn genetic diseases
- CERS3 p.Arg229Ser Uncertain significance Single submitter
-
CERS3 p.Arg54Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Arg92Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- CERS3 p.Asp239Val Uncertain significance Single submitter
-
CERS3 p.Asp341Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Gln133Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Glu110Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Glu361Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.His211Asp
Uncertain significance
Single submitter
autosomal recessive congenital ichthyosis 9
- CERS3 p.His212Tyr Uncertain significance Single submitter
-
CERS3 p.His374Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Ile150Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Ile216Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Ile277Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Ile322Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Ile51Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Ile51Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Leu153Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Leu184Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Leu306Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Phe9Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Trp10Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Tyr142Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- CERS3 p.Tyr40His Uncertain significance Single submitter
-
CERS3 p.Val32Ile
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 13
The independent predictors disagree with each other — read with care.
-
CERS3 p.Arg339Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Gln123Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Glu343Lys
Conflicting
Single submitter
Inborn genetic diseases
-
CERS3 p.Gly168Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.His211Leu
Uncertain significance
Single submitter
autosomal recessive congenital ichthyosis 9
-
CERS3 p.Ile283Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Ile99Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Met186Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Phe279Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Phe299Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Pro36Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Thr97Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
CERS3 p.Trp223Leu
Uncertain significance
Single submitter
Inborn genetic diseases
All CERS3 variants
Pathogenic 7
- p.Arg229Cys Single submitter lamellar ichthyosis
- p.Arg229His Single submitter lamellar ichthyosis
- p.Asn122fs Single submitter
- p.Phe221fs Single submitter
- p.Trp15Arg Single submitter
- p.Trp180Ter Single submitter autosomal recessive congenital ichthyosis 9
- p.Trp244Ter Single submitter autosomal recessive congenital ichthyosis 9
Likely pathogenic 14
- c.466-1G>T Multiple submitters autosomal recessive congenital ichthyosis 9
- p.Arg75Ter Multiple submitters Abnormality of the skin
- c.1000-1G>C Single submitter Ichthyosis and erythrokeratoderma
- c.174-2A>G Single submitter
- c.465+1G>A Single submitter CERS3-related disorder
- c.465+2T>G Single submitter
- c.609+1G>T Single submitter ichthyosis
- p.Asn305Lys Single submitter Abnormality of the skin
- p.Gln336Ter Single submitter Ichthyosis and erythrokeratoderma
- p.Gly149Arg Single submitter CERS3-related disorder
- p.Leu102fs Single submitter autosomal recessive congenital ichthyosis 9
- p.Leu16fs Single submitter autosomal recessive congenital ichthyosis 9
- p.Met292fs Single submitter autosomal recessive congenital ichthyosis 9
- p.Tyr189fs Single submitter autosomal recessive congenital ichthyosis 9
Conflicting classifications of pathogenicity 5
- p.Arg370Ser Single submitter ⚠
- p.Arg54His Single submitter Inborn genetic diseases ⚠
- p.Glu343Lys Single submitter Inborn genetic diseases ⚠
- p.Gly368Ser Single submitter Inborn genetic diseases ⚠
- p.Val237Leu Single submitter Inborn genetic diseases ⚠
Benign 46
- c.174-81G>A Multiple submitters
- c.407+74C>T Multiple submitters
- c.465+65A>T Multiple submitters
- c.466-110G>T Multiple submitters
- c.466-136C>A Multiple submitters
- c.516+104G>A Multiple submitters
- c.609+200T>C Multiple submitters
- c.738+203C>A Multiple submitters
- c.738+6C>T Multiple submitters
- c.845+109T>A Multiple submitters
- c.845+11C>G Multiple submitters
- c.845+53C>T Multiple submitters autosomal recessive congenital ichthyosis 9
- c.999+173T>C Multiple submitters
- c.999+60G>A Multiple submitters autosomal recessive congenital ichthyosis 9
- c.*75C>A Multiple submitters autosomal recessive congenital ichthyosis 9
- p.Arg370Gly Multiple submitters autosomal recessive congenital ichthyosis 9
- p.Arg53= Multiple submitters autosomal recessive congenital ichthyosis 9
- p.Asp342Gly Multiple submitters
- p.His238= Multiple submitters
- p.His294Arg Multiple submitters
- p.Thr4= Multiple submitters
- p.Tyr301= Multiple submitters
- p.Tyr45Cys Multiple submitters
- c.173+136G>A Single submitter
- c.174-19dup Single submitter
- c.174-201dup Single submitter
- c.174-306C>T Single submitter
- c.288+283C>T Single submitter
- c.407+305A>G Single submitter
- c.407+309del Single submitter
- c.465+129C>G Single submitter
- c.465+155G>A Single submitter
- c.465+221_465+222del Single submitter
- c.466-10C>T Single submitter
- c.466-181G>C Single submitter
- c.845+202C>T Single submitter
- c.845+265G>A Single submitter
- c.845+334G>A Single submitter
- c.846-144C>T Single submitter
- c.999+21del Single submitter
- c.999+232T>A Single submitter
- c.-355+1G>T Single submitter
- p.Arg111= Single submitter
- p.Arg373Lys Single submitter
- p.Asp342= Single submitter
- p.Leu129Met Single submitter
Benign/Likely benign 3
Likely benign 32
- p.Leu31Val Multiple submitters
- p.Val60Ile Multiple submitters Inborn genetic diseases
- c.1000-19A>G Single submitter
- c.1000-6G>C Single submitter
- c.173+11C>T Single submitter
- c.173+13T>C Single submitter
- c.173+16G>A Single submitter
- c.288+8C>T Single submitter
- c.289-18C>T Single submitter
- c.466-7C>T Single submitter
- c.738+7G>C Single submitter
- p.Ala151= Single submitter
- p.Arg339= Single submitter
- p.Asn367= Single submitter
- p.Asp344Glu Single submitter Inborn genetic diseases
- p.Glu354_Glu355del Single submitter
- p.His383= Single submitter
- p.Ile270Val Single submitter Inborn genetic diseases
- p.Leu295= Single submitter
- p.Leu308= Single submitter
- p.Leu31= Single submitter
- p.Leu39= Single submitter
- p.Met332Thr Single submitter Inborn genetic diseases
- p.Ser268= Single submitter
- p.Thr262Asn Single submitter
- p.Thr357= Single submitter
- p.Thr4Met Single submitter Inborn genetic diseases
- p.Tyr253= Single submitter
- p.Val147Ile Single submitter Inborn genetic diseases
- p.Val278Ile Single submitter Inborn genetic diseases
- p.Val41Met Single submitter Inborn genetic diseases
- c.173+9T>C No assertion criteria CERS3-related disorder
Uncertain significance 48
- p.Arg275Cys Multiple submitters Inborn genetic diseases ⚠
- p.Ser177Phe Multiple submitters Inborn genetic diseases ⚠
- c.1000-1G>A Single submitter
- c.1000-85C>A Single submitter autosomal recessive congenital ichthyosis 9
- c.516+3A>G Single submitter
- p.Ala151Val Single submitter Inborn genetic diseases ⚠
- p.Ala46Asp Single submitter Ichthyosis and erythrokeratoderma ⚠
- p.Arg111Gly Single submitter Inborn genetic diseases ⚠
- p.Arg128Met Single submitter Inborn genetic diseases ⚠
- p.Arg229Ser Single submitter ⚠
- p.Arg339Lys Single submitter Inborn genetic diseases ⚠
- p.Arg54Cys Single submitter Inborn genetic diseases ⚠
- p.Arg92Lys Single submitter Inborn genetic diseases ⚠
- p.Asp239Val Single submitter ⚠
- p.Asp341Glu Single submitter Inborn genetic diseases ⚠
- p.Gln123Lys Single submitter Inborn genetic diseases ⚠
- p.Gln133Arg Single submitter Inborn genetic diseases ⚠
- p.Glu110Gly Single submitter Inborn genetic diseases ⚠
- p.Glu347Ter Single submitter
- p.Glu361Gly Single submitter Inborn genetic diseases ⚠
- p.Gly168Cys Single submitter Inborn genetic diseases ⚠
- p.His211Asp Single submitter autosomal recessive congenital ichthyosis 9 ⚠
- p.His211Leu Single submitter autosomal recessive congenital ichthyosis 9 ⚠
- p.His212Tyr Single submitter ⚠
- p.His374Tyr Single submitter Inborn genetic diseases ⚠
- p.Ile150Thr Single submitter Inborn genetic diseases ⚠
- p.Ile216Val Single submitter Inborn genetic diseases ⚠
- p.Ile277Phe Single submitter Inborn genetic diseases ⚠
- p.Ile283Thr Single submitter Inborn genetic diseases ⚠
- p.Ile322Val Single submitter Inborn genetic diseases ⚠
- p.Ile51Thr Single submitter Inborn genetic diseases ⚠
- p.Ile51Val Single submitter Inborn genetic diseases ⚠
- p.Ile99Ser Single submitter Inborn genetic diseases ⚠
- p.Leu153Phe Single submitter Inborn genetic diseases ⚠
- p.Leu184Phe Single submitter Inborn genetic diseases ⚠
- p.Leu306Ile Single submitter Inborn genetic diseases ⚠
- p.Met186Thr Single submitter Inborn genetic diseases ⚠
- p.Phe279Leu Single submitter Inborn genetic diseases ⚠
- p.Phe299Leu Single submitter Inborn genetic diseases ⚠
- p.Phe9Ser Single submitter Inborn genetic diseases ⚠
- p.Pro36Thr Single submitter Inborn genetic diseases ⚠
- p.Thr97Pro Single submitter Inborn genetic diseases ⚠
- p.Trp10Cys Single submitter Inborn genetic diseases ⚠
- p.Trp223Leu Single submitter Inborn genetic diseases ⚠
- p.Tyr142Ser Single submitter Inborn genetic diseases ⚠
- p.Tyr40His Single submitter ⚠
- p.Val32Ile Single submitter Inborn genetic diseases ⚠
- c.609+7G>T No assertion criteria prostate cancer