CERT1 — 249 ClinVar variants

All ClinVar germline CERT1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 114 flagged for review →

4 Pathogenic · 9 Likely pathogenic · 7 Conflicting · 9 Benign · 6 Benign/Likely benign · 60 Likely benign · 154 Uncertain significance

Full CERT1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 114

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 2

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 59

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 52

The independent predictors disagree with each other — read with care.

All CERT1 variants

Pathogenic 4

Likely pathogenic 9

  • p.Ser135Phe Multiple submitters Inborn genetic diseases
  • p.Ala581Val Single submitter intellectual disability, autosomal dominant 34
  • p.Glu159Lys Single submitter ⚠
  • p.Gly243Ala Single submitter intellectual disability, autosomal dominant 34
  • p.Gly64Val Single submitter intellectual disability, autosomal dominant 34
  • p.Ser57Tyr Single submitter
  • p.Thr166Ala Single submitter intellectual disability, autosomal dominant 34 ⚠
  • p.Thr296Arg Single submitter intellectual disability, autosomal dominant 34 ⚠
  • c.-226G>A No assertion criteria

Conflicting classifications of pathogenicity 7

  • c.-205G>A Single submitter
  • c.-236C>A Single submitter intellectual disability, autosomal dominant 34
  • c.-251C>T Single submitter Inborn genetic diseases
  • p.Glu124Gln Single submitter Inborn genetic diseases ⚠
  • p.His456Arg Single submitter Inborn genetic diseases ⚠
  • p.Ser132Leu Single submitter intellectual disability, autosomal dominant 34 ⚠
  • p.Ser138Phe Single submitter intellectual disability, autosomal dominant 34 ⚠

Benign 9

Benign/Likely benign 6

Likely benign 60

Uncertain significance 154