CETP — 366 ClinVar variants

All ClinVar germline CETP variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 156 flagged for review →

4 Pathogenic · 1 Pathogenic/Likely pathogenic · 5 Likely pathogenic · 15 Conflicting · 60 Benign · 16 Benign/Likely benign · 96 Likely benign · 169 Uncertain significance

Full CETP gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 156

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 10

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 110

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 36

The independent predictors disagree with each other — read with care.

All CETP variants

Pathogenic 4

  • c.981+2T>C Single submitter Hyperalphalipoproteinemia 1
  • p.Gln90Ter Single submitter Hyperalphalipoproteinemia 1
  • p.Ser56fs Single submitter
  • c.1321+2dup No assertion criteria Hyperalphalipoproteinemia 1

Pathogenic/Likely pathogenic 1

  • c.1321+1G>A Multiple submitters hereditary spastic paraplegia 52

Likely pathogenic 5

  • p.Arg54Ter Multiple submitters Hyperalphalipoproteinemia 1
  • p.Ala294fs Single submitter Hyperalphalipoproteinemia 1
  • p.Gln322Ter Single submitter Hyperalphalipoproteinemia 1
  • p.Ser89fs Single submitter Hyperalphalipoproteinemia 1
  • c.598-1G>C No assertion criteria CETP-related disorder

Conflicting classifications of pathogenicity 15

Benign 60

Benign/Likely benign 16

  • c.1146+7C>T Multiple submitters Hyperalphalipoproteinemia 1
  • c.598-13C>G Multiple submitters Hyperalphalipoproteinemia 1
  • p.Ala212= Multiple submitters Hyperalphalipoproteinemia 1
  • p.Arg154Trp Multiple submitters Hyperalphalipoproteinemia 1 ⚠
  • p.Asp307= Multiple submitters Hyperalphalipoproteinemia 1
  • p.Asp459= Multiple submitters Hyperalphalipoproteinemia 1
  • p.Gln490= Multiple submitters Hyperalphalipoproteinemia 1
  • p.Gly178= Multiple submitters Hyperalphalipoproteinemia 1
  • p.Gly331Ser Multiple submitters Hyperalphalipoproteinemia 1
  • p.His252= Multiple submitters
  • p.Ser221Arg Multiple submitters Hyperalphalipoproteinemia 1
  • p.Ser268= Multiple submitters Hyperalphalipoproteinemia 1
  • p.Ser349Tyr Multiple submitters Hyperalphalipoproteinemia 1
  • p.Thr22= Multiple submitters Hyperalphalipoproteinemia 1
  • p.Thr339= Multiple submitters Hyperalphalipoproteinemia 1
  • p.Val385Met Multiple submitters Hyperalphalipoproteinemia 1

Likely benign 96

Uncertain significance 169