CFAP410 — 418 ClinVar variants

All ClinVar germline CFAP410 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 152 flagged for review →

29 Pathogenic · 8 Pathogenic/Likely pathogenic · 8 Likely pathogenic · 8 Conflicting · 33 Benign · 1 Benign/Likely benign · 158 Likely benign · 173 Uncertain significance

Full CFAP410 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 152

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 68

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 81

The independent predictors disagree with each other — read with care.

All CFAP410 variants

Pathogenic 29

Pathogenic/Likely pathogenic 8

  • c.643-23A>T Multiple submitters axial spondylometaphyseal dysplasia
  • c.96+1G>T Multiple submitters inherited retinal dystrophy
  • p.Arg73Pro Multiple submitters axial spondylometaphyseal dysplasia ⚠
  • p.Glu148fs Multiple submitters retinal dystrophy with or without macular staphyloma
  • p.Glu96Lys Multiple submitters retinal dystrophy with or without macular staphyloma ⚠
  • p.Pro116Leu Multiple submitters retinal dystrophy with or without macular staphyloma
  • p.Ser165fs Multiple submitters Autosomal recessive CFAP410-related disorders
  • p.Thr114_Arg117dup Multiple submitters retinal dystrophy with or without macular staphyloma

Likely pathogenic 8

  • c.373+91A>G Single submitter retinal dystrophy with or without macular staphyloma
  • c.77+2T>C Single submitter axial spondylometaphyseal dysplasia
  • c.78-1G>T Single submitter retinal dystrophy with or without macular staphyloma
  • c.78-2del Single submitter
  • c.97-1G>A Single submitter
  • p.Glu130del Single submitter retinal dystrophy with or without macular staphyloma
  • p.Thr182fs Single submitter retinal dystrophy with or without macular staphyloma
  • p.Leu64Gln No assertion criteria inherited retinal dystrophy

Conflicting classifications of pathogenicity 8

Benign 33

Benign/Likely benign 1

Likely benign 158

Uncertain significance 173