CFHR5 — 359 ClinVar variants

All ClinVar germline CFHR5 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 204 flagged for review →

2 Pathogenic · 1 Likely pathogenic · 41 Conflicting · 18 Benign · 19 Benign/Likely benign · 45 Likely benign · 233 Uncertain significance

Full CFHR5 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 204

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 17

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 87

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 100

The independent predictors disagree with each other — read with care.

All CFHR5 variants

Pathogenic 2

Likely pathogenic 1

Conflicting classifications of pathogenicity 41

  • c.254-2_266dup Single submitter
  • c.608-6T>C Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • c.970+2T>G Single submitter CFHR5 deficiency
  • p.Ala547= Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Ala547Val Single submitter CFHR5 deficiency ⚠
  • p.Arg206Gln Single submitter CFHR5 deficiency ⚠
  • p.Arg223Ser Single submitter Inborn genetic diseases ⚠
  • p.Arg441His Single submitter Inborn genetic diseases ⚠
  • p.Arg477His Single submitter Inborn genetic diseases ⚠
  • p.Arg555Pro Single submitter Inborn genetic diseases ⚠
  • p.Arg69Cys Single submitter Inborn genetic diseases ⚠
  • p.Arg69His Single submitter Inborn genetic diseases ⚠
  • p.Asn216Ser Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II ⚠
  • p.Asn216Tyr Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II ⚠
  • p.Asn40Lys Single submitter Inborn genetic diseases ⚠
  • p.Asn457Asp Single submitter C3 glomerulonephritis ⚠
  • p.Cys208Arg Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II ⚠
  • p.Cys331Ter Single submitter C3 glomerulonephritis
  • p.Cys389Arg Single submitter C3 glomerulonephritis ⚠
  • p.Gln479Arg Single submitter C3 glomerulonephritis ⚠
  • p.Gln520= Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Glu163fs Single submitter kidney disorder
  • p.Glu226fs Single submitter CFHR5 deficiency
  • p.Glu234Lys Single submitter C3 glomerulonephritis ⚠
  • p.Glu294Lys Single submitter C3 glomerulonephritis ⚠
  • p.Gly117Arg Single submitter C3 glomerulonephritis ⚠
  • p.Gly228Ala Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Gly450= Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Gly471Glu Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II ⚠
  • p.Leu521Ile Single submitter C3 glomerulonephritis ⚠
  • p.Lys144Asn Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II ⚠
  • p.Met401Thr Single submitter ⚠
  • p.Met514Arg Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II ⚠
  • p.Pro81Leu Single submitter Inborn genetic diseases ⚠
  • p.Ser78Pro Single submitter ⚠
  • p.Thr143Pro Single submitter CFHR5 deficiency ⚠
  • p.Tyr279Asn Single submitter ⚠
  • p.Tyr301= Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Val170Met Single submitter CFHR5 deficiency ⚠
  • p.Val379Leu Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II ⚠
  • p.Val60Leu Single submitter Inborn genetic diseases ⚠

Benign 18

  • c.1147+24G>T Multiple submitters
  • c.253+59C>T Multiple submitters
  • c.254-183G>A Multiple submitters
  • c.58+17T>A Multiple submitters CFHR5 deficiency
  • c.-20T>C Multiple submitters atypical hemolytic-uremic syndrome
  • c.*741T>G Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • c.*802T>G Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • c.253+289C>T Single submitter
  • c.431-204T>A Single submitter
  • c.431-228A>G Single submitter
  • c.58+178T>C Single submitter
  • c.58+287C>T Single submitter
  • c.59-145A>G Single submitter
  • c.*397C>G Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • c.*3C>G Single submitter
  • c.*969T>A Single submitter CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Lys343= Single submitter
  • p.Val293= Single submitter

Benign/Likely benign 19

  • c.254-5C>T Multiple submitters CFHR5 deficiency
  • c.254-8T>G Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Arg356His Multiple submitters CFHR5 deficiency ⚠
  • p.Arg385Ser Multiple submitters CFHR5 deficiency
  • p.Asn178Ser Multiple submitters CFHR5 deficiency
  • p.Asn244= Multiple submitters CFHR5 deficiency
  • p.Asn372= Multiple submitters CFHR5 deficiency
  • p.Asp169= Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Cys568Ter Multiple submitters kidney disorder
  • p.Gly145Glu Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Gly278Ser Multiple submitters CFHR5 deficiency ⚠
  • p.Leu529Arg Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II ⚠
  • p.Lys162= Multiple submitters
  • p.Pro46Ser Multiple submitters CFHR5 deficiency ⚠
  • p.Pro81= Multiple submitters CFHR5 deficiency
  • p.Ser128= Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Thr143= Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Val110= Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Val110Ala Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II ⚠

Likely benign 45

Uncertain significance 233