CHRDL1 — 98 ClinVar variants
All ClinVar germline CHRDL1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 49 flagged for review →
17 Pathogenic · 5 Likely pathogenic · 2 Conflicting · 14 Benign · 2 Benign/Likely benign · 8 Likely benign · 50 Uncertain significance
Full CHRDL1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 49
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
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CHRDL1 p.Arg196Gln
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 29
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
CHRDL1 p.Glu423Asp
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CHRDL1 p.Ala229Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Arg435His
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Asn137Ser
Uncertain significance
Single submitter
CHRDL1-related disorder
-
CHRDL1 p.Asp191Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- CHRDL1 p.Cys175Tyr Uncertain significance Single submitter
-
CHRDL1 p.Cys323Phe
Uncertain significance
Single submitter
megalocornea
-
CHRDL1 p.Cys437Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Gln145Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Glu403Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Glu423Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Glu69Asp
Uncertain significance
Single submitter
megalocornea
-
CHRDL1 p.Gly234Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Gly341Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Gly345Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.His90Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Ile246Val
Uncertain significance
Single submitter
Inborn genetic diseases
- CHRDL1 p.Ile251Val Uncertain significance Single submitter
-
CHRDL1 p.Leu128Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Leu415Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Lys318Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Met237Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Met7Ile
Uncertain significance
Single submitter
CHRDL1-related disorder
-
CHRDL1 p.Pro333Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Ser416Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Thr112Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Thr144Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- CHRDL1 p.Thr362Ile Uncertain significance Single submitter
- CHRDL1 p.Tyr123Cys Uncertain significance Single submitter
Predictors split 19
The independent predictors disagree with each other — read with care.
-
CHRDL1 p.Arg196Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Arg201Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Arg209Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Arg233Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Arg77Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Asp443Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Glu425Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Gly222Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Gly244Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Gly424Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- CHRDL1 p.Lys310Met Uncertain significance Single submitter
-
CHRDL1 p.Lys314Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- CHRDL1 p.Phe391Ser Uncertain significance Single submitter
-
CHRDL1 p.Phe421Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Ser210Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Thr348Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Tyr311Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Val153Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
CHRDL1 p.Val63Met
Uncertain significance
Single submitter
Inborn genetic diseases
All CHRDL1 variants
Pathogenic 17
- c.1156+1G>T Single submitter megalocornea
- c.301+2T>G Single submitter megalocornea
- c.94+1G>A Single submitter megalocornea
- p.Arg49Ter Single submitter
- p.Arg77Ter Single submitter megalocornea
- p.Glu117Ter Single submitter isolated congenital megalocornea
- p.Leu104Ter Single submitter
- p.Lys162fs Single submitter megalocornea
- p.Lys326Ter Single submitter megalocornea
- p.Ser174fs Single submitter megalocornea
- c.207+1G>A No assertion criteria isolated congenital megalocornea
- p.Arg218Ter No assertion criteria megalocornea
- p.Cys261Phe No assertion criteria megalocornea
- p.Cys291fs No assertion criteria megalocornea
- p.Gln375Ter No assertion criteria megalocornea
- p.Glu34fs No assertion criteria megalocornea
- p.His270fs No assertion criteria megalocornea
Likely pathogenic 5
- p.Cys146Gly Single submitter megalocornea
- p.Cys291Tyr Single submitter isolated congenital megalocornea
- p.Leu59Ter Single submitter corneal disorder
- p.Ser149Ter Single submitter
- p.Val30fs Single submitter isolated congenital megalocornea
Conflicting classifications of pathogenicity 2
- c.542-8A>G Single submitter Inborn genetic diseases
- p.Arg196Gln Single submitter Inborn genetic diseases ⚠
Benign 14
- p.Arg209His Multiple submitters
- p.Lys318= Multiple submitters
- p.Met7Val Multiple submitters
- c.1247-18C>T Single submitter
- c.778+20T>A Single submitter
- c.989-19A>G Single submitter
- p.Arg225His Single submitter
- p.Arg384Gln Single submitter
- p.Cys143= Single submitter
- p.Cys303= Single submitter
- p.Glu369Lys Single submitter
- p.Ser15= Single submitter
- p.Ser76= Single submitter
- p.Tyr449His Single submitter
Benign/Likely benign 2
Likely benign 8
- p.Thr35= Multiple submitters
- c.610-13del Single submitter
- p.Gly58= Single submitter
- p.His211= Single submitter
- p.Met38Val Single submitter Inborn genetic diseases
- p.Thr245= Single submitter
- p.Val355Ile Single submitter
- p.Val380Ile Single submitter
Uncertain significance 50
- p.Glu423Asp Multiple submitters Inborn genetic diseases ⚠
- c.541+3A>G Single submitter isolated congenital megalocornea
- p.Ala229Val Single submitter Inborn genetic diseases ⚠
- p.Arg196Trp Single submitter Inborn genetic diseases ⚠
- p.Arg201Lys Single submitter Inborn genetic diseases ⚠
- p.Arg209Cys Single submitter Inborn genetic diseases ⚠
- p.Arg233Trp Single submitter Inborn genetic diseases ⚠
- p.Arg435His Single submitter Inborn genetic diseases ⚠
- p.Arg77Gln Single submitter Inborn genetic diseases ⚠
- p.Asn137Ser Single submitter CHRDL1-related disorder ⚠
- p.Asp191Gly Single submitter Inborn genetic diseases ⚠
- p.Asp443Gly Single submitter Inborn genetic diseases ⚠
- p.Cys175Tyr Single submitter ⚠
- p.Cys323Phe Single submitter megalocornea ⚠
- p.Cys437Phe Single submitter Inborn genetic diseases ⚠
- p.Cys67Phe Single submitter
- p.Gln145Glu Single submitter Inborn genetic diseases ⚠
- p.Glu403Gly Single submitter Inborn genetic diseases ⚠
- p.Glu423Lys Single submitter Inborn genetic diseases ⚠
- p.Glu425Lys Single submitter Inborn genetic diseases ⚠
- p.Glu69Asp Single submitter megalocornea ⚠
- p.Gly222Cys Single submitter Inborn genetic diseases ⚠
- p.Gly234Glu Single submitter Inborn genetic diseases ⚠
- p.Gly244Glu Single submitter Inborn genetic diseases ⚠
- p.Gly341Asp Single submitter Inborn genetic diseases ⚠
- p.Gly345Arg Single submitter Inborn genetic diseases ⚠
- p.Gly424Arg Single submitter Inborn genetic diseases ⚠
- p.His90Arg Single submitter Inborn genetic diseases ⚠
- p.Ile246Val Single submitter Inborn genetic diseases ⚠
- p.Ile251Val Single submitter ⚠
- p.Leu128Val Single submitter Inborn genetic diseases ⚠
- p.Leu415Pro Single submitter Inborn genetic diseases ⚠
- p.Lys310Met Single submitter ⚠
- p.Lys314Arg Single submitter Inborn genetic diseases ⚠
- p.Lys318Arg Single submitter Inborn genetic diseases ⚠
- p.Met237Leu Single submitter Inborn genetic diseases ⚠
- p.Met7Ile Single submitter CHRDL1-related disorder ⚠
- p.Phe391Ser Single submitter ⚠
- p.Phe421Leu Single submitter Inborn genetic diseases ⚠
- p.Pro333Leu Single submitter Inborn genetic diseases ⚠
- p.Ser210Cys Single submitter Inborn genetic diseases ⚠
- p.Ser416Asn Single submitter Inborn genetic diseases ⚠
- p.Thr112Ala Single submitter Inborn genetic diseases ⚠
- p.Thr144Ala Single submitter Inborn genetic diseases ⚠
- p.Thr348Met Single submitter Inborn genetic diseases ⚠
- p.Thr362Ile Single submitter ⚠
- p.Tyr123Cys Single submitter ⚠
- p.Tyr311Cys Single submitter Inborn genetic diseases ⚠
- p.Val153Met Single submitter Inborn genetic diseases ⚠
- p.Val63Met Single submitter Inborn genetic diseases ⚠