CISD2 — 80 ClinVar variants
All ClinVar germline CISD2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 29 flagged for review →
3 Pathogenic · 1 Likely pathogenic · 1 Conflicting · 3 Benign · 3 Benign/Likely benign · 37 Likely benign · 32 Uncertain significance
Full CISD2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 29
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
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CISD2 p.Glu37Gln
Pathogenic
No assertion criteria
Wolfram syndrome 2
Predictors lean, ClinVar uncertain 11
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
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CISD2 p.Val135Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
- CISD2 p.Ala109Thr Uncertain significance Single submitter
- CISD2 p.Arg100Gly Uncertain significance Single submitter
-
CISD2 p.Arg103Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
CISD2 p.Glu134Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CISD2 p.Glu89Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- CISD2 p.Ile75Thr Uncertain significance Single submitter
- CISD2 p.Leu48Phe Uncertain significance Single submitter
-
CISD2 p.Phe107Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
CISD2 p.Thr121Ile
Uncertain significance
Single submitter
Wolfram syndrome 2
-
CISD2 p.Tyr53His
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 17
The independent predictors disagree with each other — read with care.
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CISD2 p.Arg57Cys
Uncertain significance
Multiple submitters
Wolfram syndrome 2
-
CISD2 p.Arg57His
Uncertain significance
Multiple submitters
Wolfram syndrome 2
-
CISD2 p.Asn87Ser
Uncertain significance
Multiple submitters
Wolfram syndrome 2
-
CISD2 p.Glu4Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CISD2 p.Pro61Leu
Uncertain significance
Multiple submitters
Wolfram syndrome 2
-
CISD2 p.Pro80Leu
Uncertain significance
Multiple submitters
Wolfram syndrome 2
-
CISD2 p.Thr28Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
- CISD2 p.Ala31Val Uncertain significance Single submitter
- CISD2 p.Ala7Thr Uncertain significance Single submitter
- CISD2 p.Arg40Trp Uncertain significance Single submitter
- CISD2 p.Asn79Tyr Uncertain significance Single submitter
- CISD2 p.Gln76Leu Uncertain significance Single submitter
- CISD2 p.Gln76Lys Uncertain significance Single submitter
-
CISD2 p.Glu78Gly
Uncertain significance
Single submitter
Wolfram syndrome 2
-
CISD2 p.Ile88Thr
Uncertain significance
Single submitter
Wolfram syndrome 2
-
CISD2 p.Ile88Val
Uncertain significance
Single submitter
Wolfram syndrome 2
-
CISD2 p.Thr106Met
Uncertain significance
Single submitter
Wolfram syndrome 2
All CISD2 variants
Pathogenic 3
- c.103+1G>A No assertion criteria Wolfram syndrome 2
- c.(104_304 No assertion criteria Wolfram syndrome 2
- p.Glu37Gln No assertion criteria Wolfram syndrome 2 ⚠
Likely pathogenic 1
- p.Glu37Ter Single submitter Wolfram syndrome 2
Conflicting classifications of pathogenicity 1
- p.Glu4= Single submitter
Benign 3
- c.103+13del Single submitter
- c.318+20G>A Single submitter
- p.His114Tyr Single submitter
Benign/Likely benign 3
- c.104-9C>A Multiple submitters Wolfram syndrome 2
- p.Gly112= Multiple submitters
- p.Pro80= Multiple submitters Wolfram syndrome 2
Likely benign 37
- c.319-20T>C Multiple submitters Wolfram syndrome 2
- p.Leu18= Multiple submitters
- c.103+12C>G Single submitter
- c.103+12C>T Single submitter
- c.103+13C>T Single submitter
- c.103+14A>C Single submitter
- c.103+16C>G Single submitter
- c.103+5353C>G Single submitter
- c.103+7C>T Single submitter
- c.103+9C>T Single submitter
- c.104-10A>G Single submitter
- c.104-12C>T Single submitter
- c.104-6G>A Single submitter
- c.104-8dup Single submitter
- c.318+16A>T Single submitter
- c.318+17C>T Single submitter
- c.318+18G>A Single submitter
- c.318+19T>C Single submitter
- c.-32G>A Single submitter
- p.Ala16= Single submitter
- p.Ala7= Single submitter
- p.Arg100= Single submitter
- p.Arg40= Single submitter
- p.Asp68= Single submitter
- p.Gln65= Single submitter
- p.Gln76= Single submitter
- p.Gly29= Single submitter
- p.Ile88= Single submitter
- p.Leu21= Single submitter
- p.Leu48= Single submitter
- p.Lys131= Single submitter
- p.Lys132= Single submitter
- p.Pro22= Single submitter
- p.Pro61= Single submitter
- p.Thr28= Single submitter
- p.Tyr98= Single submitter
- p.Val2= Single submitter
Uncertain significance 32
- c.103+6C>A Multiple submitters Wolfram syndrome 2
- p.Arg57Cys Multiple submitters Wolfram syndrome 2 ⚠
- p.Arg57His Multiple submitters Wolfram syndrome 2 ⚠
- p.Asn87Ser Multiple submitters Wolfram syndrome 2 ⚠
- p.Glu4Gln Multiple submitters Inborn genetic diseases ⚠
- p.Pro61Leu Multiple submitters Wolfram syndrome 2 ⚠
- p.Pro80Leu Multiple submitters Wolfram syndrome 2 ⚠
- p.Thr28Ile Multiple submitters Inborn genetic diseases ⚠
- p.Val135Ile Multiple submitters Inborn genetic diseases ⚠
- c.103+5T>G Single submitter
- c.*79C>A Single submitter
- p.Ala109Thr Single submitter ⚠
- p.Ala31Val Single submitter ⚠
- p.Ala7Thr Single submitter ⚠
- p.Arg100Gly Single submitter ⚠
- p.Arg103Pro Single submitter Inborn genetic diseases ⚠
- p.Arg40Trp Single submitter ⚠
- p.Asn79Tyr Single submitter ⚠
- p.Gln76Leu Single submitter ⚠
- p.Gln76Lys Single submitter ⚠
- p.Glu134Lys Single submitter Inborn genetic diseases ⚠
- p.Glu78Gly Single submitter Wolfram syndrome 2 ⚠
- p.Glu89Gly Single submitter Inborn genetic diseases ⚠
- p.Ile75Thr Single submitter ⚠
- p.Ile88Thr Single submitter Wolfram syndrome 2 ⚠
- p.Ile88Val Single submitter Wolfram syndrome 2 ⚠
- p.Leu48Phe Single submitter ⚠
- p.Phe107Leu Single submitter Inborn genetic diseases ⚠
- p.Ter136Ser Single submitter Wolfram syndrome 2
- p.Thr106Met Single submitter Wolfram syndrome 2 ⚠
- p.Thr121Ile Single submitter Wolfram syndrome 2 ⚠
- p.Tyr53His Single submitter Inborn genetic diseases ⚠