CLIC5 — 159 ClinVar variants
All ClinVar germline CLIC5 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 69 flagged for review →
2 Pathogenic · 1 Likely pathogenic · 8 Conflicting · 29 Benign · 7 Benign/Likely benign · 48 Likely benign · 64 Uncertain significance
Full CLIC5 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 69
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 3
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
- CLIC5 p.Ala121Thr Conflicting Single submitter
- CLIC5 p.Arg247Cys Conflicting Single submitter
-
CLIC5 p.Asn112Asp
Conflicting
Single submitter
autosomal recessive nonsyndromic hearing loss 103
Predictors lean, ClinVar uncertain 34
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- CLIC5 p.Arg203His Uncertain significance Multiple submitters
- CLIC5 p.His54Arg Uncertain significance Multiple submitters
- CLIC5 p.Ile41Phe Uncertain significance Multiple submitters
- CLIC5 p.Ser251Ala Uncertain significance Multiple submitters
- CLIC5 p.Val81Met Uncertain significance Multiple submitters
- CLIC5 p.Ala162Thr Uncertain significance Single submitter
- CLIC5 p.Ala245Thr Uncertain significance Single submitter
- CLIC5 p.Ala67Val Uncertain significance Single submitter
- CLIC5 p.Arg203Cys Uncertain significance Single submitter
- CLIC5 p.Arg203Leu Uncertain significance Single submitter
- CLIC5 p.Arg250Gln Uncertain significance Single submitter
- CLIC5 p.Arg37His Uncertain significance Single submitter
- CLIC5 p.Arg37Ser Uncertain significance Single submitter
- CLIC5 p.Asn187His Uncertain significance Single submitter
- CLIC5 p.Asn78Lys Uncertain significance Single submitter
- CLIC5 p.Asp185Asn Uncertain significance Single submitter
- CLIC5 p.Gly170Arg Uncertain significance Single submitter
- CLIC5 p.Ile118Asn Uncertain significance Single submitter
- CLIC5 p.Ile118Val Uncertain significance Single submitter
- CLIC5 p.Leu63Pro Uncertain significance Single submitter
- CLIC5 p.Phe122Leu Uncertain significance Single submitter
- CLIC5 p.Phe227Cys Uncertain significance Single submitter
- CLIC5 p.Phe74Leu Uncertain significance Single submitter
- CLIC5 p.Phe91Ile Uncertain significance Single submitter
- CLIC5 p.Pro60Leu Uncertain significance Single submitter
- CLIC5 p.Pro72Leu Uncertain significance Single submitter
- CLIC5 p.Ser171Phe Uncertain significance Single submitter
- CLIC5 p.Ser35Phe Uncertain significance Single submitter
- CLIC5 p.Thr164Asn Uncertain significance Single submitter
- CLIC5 p.Thr97Ser Uncertain significance Single submitter
- CLIC5 p.Val198Leu Uncertain significance Single submitter
- CLIC5 p.Val47Ile Uncertain significance Single submitter
- CLIC5 p.Val48Met Uncertain significance Single submitter
- CLIC5 p.Val81Ala Uncertain significance Single submitter
Predictors split 32
The independent predictors disagree with each other — read with care.
- CLIC5 p.Arg216Gln Uncertain significance Multiple submitters
- CLIC5 p.Arg224His Uncertain significance Multiple submitters
- CLIC5 p.Asn204Thr Uncertain significance Multiple submitters
- CLIC5 p.Glu159Asp Benign/Likely benign Multiple submitters
- CLIC5 p.Leu96Phe Uncertain significance Multiple submitters
- CLIC5 p.Thr142Ile Benign/Likely benign Multiple submitters
- CLIC5 p.Thr70Met Uncertain significance Multiple submitters
- CLIC5 p.Ala106Thr Uncertain significance Single submitter
- CLIC5 p.Ala114Val Uncertain significance Single submitter
- CLIC5 p.Ala233Thr Uncertain significance Single submitter
- CLIC5 p.Arg109Gln Conflicting Single submitter
- CLIC5 p.Arg109Trp Uncertain significance Single submitter
- CLIC5 p.Arg172Trp Conflicting Single submitter
- CLIC5 p.Arg247Leu Uncertain significance Single submitter
-
CLIC5 p.Asn134Ser
Uncertain significance
Single submitter
autosomal recessive nonsyndromic hearing loss 103
- CLIC5 p.Asn153Tyr Uncertain significance Single submitter
- CLIC5 p.Asn220Lys Uncertain significance Single submitter
- CLIC5 p.Asn78Ser Uncertain significance Single submitter
- CLIC5 p.Asp150Val Uncertain significance Single submitter
- CLIC5 p.Asp168His Uncertain significance Single submitter
- CLIC5 p.Asp179Gly Uncertain significance Single submitter
- CLIC5 p.Glu167Lys Conflicting Single submitter
- CLIC5 p.Glu99Gly Uncertain significance Single submitter
- CLIC5 p.Gly69Ser Uncertain significance Single submitter
- CLIC5 p.Ile160Thr Uncertain significance Single submitter
- CLIC5 p.Ser171Cys Uncertain significance Single submitter
- CLIC5 p.Thr129Ala Uncertain significance Single submitter
- CLIC5 p.Thr52Ser Uncertain significance Single submitter
- CLIC5 p.Trp215Arg Uncertain significance Single submitter
-
CLIC5 p.Tyr205Cys
Uncertain significance
Single submitter
hearing loss disorder
- CLIC5 p.Val81Leu Uncertain significance Single submitter
- CLIC5 p.Val85Ile Conflicting Single submitter
All CLIC5 variants
Pathogenic 2
- p.Asp179fs Single submitter autosomal recessive nonsyndromic hearing loss 103
- p.Cys32Ter No assertion criteria autosomal recessive nonsyndromic hearing loss 103
Likely pathogenic 1
- p.Trp215Ter No assertion criteria hearing loss, autosomal recessive
Conflicting classifications of pathogenicity 8
- c.407-8C>A Single submitter
- p.Ala121Thr Single submitter ⚠
- p.Arg109Gln Single submitter ⚠
- p.Arg172Trp Single submitter ⚠
- p.Arg247Cys Single submitter ⚠
- p.Asn112Asp Single submitter autosomal recessive nonsyndromic hearing loss 103 ⚠
- p.Glu167Lys Single submitter ⚠
- p.Val85Ile Single submitter ⚠
Benign 29
- c.300-20C>T Multiple submitters
- c.588+1480T>C Multiple submitters
- c.588+1486T>C Multiple submitters
- c.589-9_589-8del Multiple submitters
- p.Arg172Gln Multiple submitters
- p.Gln100Leu Multiple submitters
- p.Glu174= Multiple submitters
- p.Glu4Lys Multiple submitters
- p.Pro98His Multiple submitters
- p.Thr114Ala Multiple submitters
- p.Tyr39= Multiple submitters
- c.173+23G>A Single submitter
- c.173+76C>T Single submitter
- c.174-23C>A Single submitter
- c.406+139dup Single submitter
- c.540+171A>G Single submitter
- c.540+291A>G Single submitter
- c.540+300A>G Single submitter
- c.540+306G>A Single submitter
- c.541-60702G>C Single submitter
- c.588+1654A>G Single submitter
- c.63+141C>G Single submitter
- c.63+241T>C Single submitter
- c.64-145T>G Single submitter
- c.-21A>G Single submitter
- c.-287G>T Single submitter
- c.-55+49000C>A Single submitter
- c.-55+49121C>A Single submitter
- p.Asp25Asn Single submitter
Benign/Likely benign 7
- p.Ala114Glu Multiple submitters
- p.Ala121= Multiple submitters
- p.Ala232= Multiple submitters
- p.Arg79Ser Multiple submitters autosomal recessive nonsyndromic hearing loss 103
- p.Glu159Asp Multiple submitters ⚠
- p.Thr142Ile Multiple submitters ⚠
- p.Thr164Ser Multiple submitters
Likely benign 48
- c.173+10G>A Multiple submitters
- c.588+1792T>C Multiple submitters
- p.Ala114= Multiple submitters
- p.Asp117= Multiple submitters
- p.Cys120= Multiple submitters
- p.Gly97Asp Multiple submitters
- p.His64= Multiple submitters
- p.Leu152= Multiple submitters
- p.Pro208= Multiple submitters
- p.Pro72= Multiple submitters
- p.Tyr241= Multiple submitters
- c.173+10G>C Single submitter
- c.173+9C>T Single submitter
- c.174-322C>T Single submitter
- c.174-3C>T Single submitter
- c.299+16T>C Single submitter
- c.299+34G>C Single submitter
- c.300-16G>A Single submitter
- c.300-4C>T Single submitter
- c.406+11C>T Single submitter
- c.406+8A>C Single submitter
- c.407-12C>T Single submitter
- c.407-14C>T Single submitter
- c.407-19T>C Single submitter
- c.407-245T>C Single submitter
- c.589-206G>A Single submitter
- c.-28C>A Single submitter
- p.Ala124= Single submitter
- p.Ala199= Single submitter
- p.Asn220= Single submitter
- p.Asn65= Single submitter
- p.Asp13Glu Single submitter
- p.Asp161= Single submitter
- p.Asp80= Single submitter
- p.Ile116= Single submitter
- p.Ile24= Single submitter
- p.Leu145= Single submitter
- p.Leu188= Single submitter
- p.Leu192= Single submitter
- p.Lys169= Single submitter
- p.Lys191= Single submitter
- p.Pro33= Single submitter
- p.Pro68= Single submitter
- p.Ser120= Single submitter
- p.Ser70= Single submitter
- p.Thr129= Single submitter
- p.Tyr205= Single submitter
- c.*1G>A No assertion criteria CLIC5-related disorder
Uncertain significance 64
- p.Arg203His Multiple submitters ⚠
- p.Arg216Gln Multiple submitters ⚠
- p.Arg224His Multiple submitters ⚠
- p.Asn204Thr Multiple submitters ⚠
- p.His54Arg Multiple submitters ⚠
- p.Ile41Phe Multiple submitters ⚠
- p.Leu96Phe Multiple submitters ⚠
- p.Ser251Ala Multiple submitters ⚠
- p.Thr70Met Multiple submitters ⚠
- p.Val81Met Multiple submitters ⚠
- c.173+5C>T Single submitter
- c.173+6G>A Single submitter
- p.Ala106Thr Single submitter ⚠
- p.Ala114Val Single submitter ⚠
- p.Ala162Thr Single submitter ⚠
- p.Ala233Thr Single submitter ⚠
- p.Ala245Thr Single submitter ⚠
- p.Ala67Val Single submitter ⚠
- p.Arg109Trp Single submitter ⚠
- p.Arg203Cys Single submitter ⚠
- p.Arg203Leu Single submitter ⚠
- p.Arg247Leu Single submitter ⚠
- p.Arg250Gln Single submitter ⚠
- p.Arg250Ter Single submitter
- p.Arg37His Single submitter ⚠
- p.Arg37Ser Single submitter ⚠
- p.Asn134Ser Single submitter autosomal recessive nonsyndromic hearing loss 103 ⚠
- p.Asn153Tyr Single submitter ⚠
- p.Asn187His Single submitter ⚠
- p.Asn220Lys Single submitter ⚠
- p.Asn78Lys Single submitter ⚠
- p.Asn78Ser Single submitter ⚠
- p.Asp150Val Single submitter ⚠
- p.Asp168His Single submitter ⚠
- p.Asp179Gly Single submitter ⚠
- p.Asp185Asn Single submitter ⚠
- p.Glu99Gly Single submitter ⚠
- p.Gly140_Leu141insTer Single submitter
- p.Gly170Arg Single submitter ⚠
- p.Gly69Ser Single submitter ⚠
- p.Ile118Asn Single submitter ⚠
- p.Ile118Val Single submitter ⚠
- p.Ile160Thr Single submitter ⚠
- p.Leu63Pro Single submitter ⚠
- p.Phe122Leu Single submitter ⚠
- p.Phe227Cys Single submitter ⚠
- p.Phe74Leu Single submitter ⚠
- p.Phe91Ile Single submitter ⚠
- p.Pro60Leu Single submitter ⚠
- p.Pro72Leu Single submitter ⚠
- p.Ser171Cys Single submitter ⚠
- p.Ser171Phe Single submitter ⚠
- p.Ser35Phe Single submitter ⚠
- p.Thr129Ala Single submitter ⚠
- p.Thr164Asn Single submitter ⚠
- p.Thr52Ser Single submitter ⚠
- p.Thr97Ser Single submitter ⚠
- p.Trp215Arg Single submitter ⚠
- p.Tyr205Cys Single submitter hearing loss disorder ⚠
- p.Val198Leu Single submitter ⚠
- p.Val47Ile Single submitter ⚠
- p.Val48Met Single submitter ⚠
- p.Val81Ala Single submitter ⚠
- p.Val81Leu Single submitter ⚠