CLN8 — 541 ClinVar variants

All ClinVar germline CLN8 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 248 flagged for review →

41 Pathogenic · 15 Pathogenic/Likely pathogenic · 28 Likely pathogenic · 28 Conflicting · 12 Benign · 7 Benign/Likely benign · 170 Likely benign · 240 Uncertain significance

Full CLN8 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 248

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 13

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 138

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 96

The independent predictors disagree with each other — read with care.

All CLN8 variants

Pathogenic 41

  • p.Arg24Gly Multiple submitters neuronal ceroid lipofuscinosis 8 northern epilepsy variant
  • p.Gln255Ter Multiple submitters neuronal ceroid lipofuscinosis
  • p.Trp104Ter Multiple submitters neuronal ceroid lipofuscinosis
  • p.Trp263Cys Multiple submitters neuronal ceroid lipofuscinosis ⚠
  • p.Val236fs Multiple submitters Inborn genetic diseases
  • c.543+1G>A Single submitter neuronal ceroid lipofuscinosis
  • p.Ala142fs Single submitter neuronal ceroid lipofuscinosis 8
  • p.Ala160fs Single submitter neuronal ceroid lipofuscinosis
  • p.Ala80fs Single submitter neuronal ceroid lipofuscinosis
  • p.Arg54fs Single submitter neuronal ceroid lipofuscinosis
  • p.Asp88fs Single submitter neuronal ceroid lipofuscinosis
  • p.Asp94fs Single submitter neuronal ceroid lipofuscinosis
  • p.Cys149Ter Single submitter neuronal ceroid lipofuscinosis 8
  • p.Cys42Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Gln100Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Gln256Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Gln44Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Gln76Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Glu186fs Single submitter neuronal ceroid lipofuscinosis
  • p.Gly183fs Single submitter neuronal ceroid lipofuscinosis
  • p.His106fs Single submitter neuronal ceroid lipofuscinosis
  • p.Ile23_Ser25del Single submitter neuronal ceroid lipofuscinosis
  • p.Leu126Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Leu180Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Lys95Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Met1* Single submitter neuronal ceroid lipofuscinosis 8 northern epilepsy variant
  • p.Met1Leu Single submitter neuronal ceroid lipofuscinosis
  • p.Phe143fs Single submitter neuronal ceroid lipofuscinosis
  • p.Trp177Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Trp184Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Trp212Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Trp263Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Trp64Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Trp83Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Tyr209Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Tyr227fs Single submitter neuronal ceroid lipofuscinosis
  • p.Tyr35Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Tyr53Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Val38fs Single submitter neuronal ceroid lipofuscinosis
  • p.Val41fs Single submitter neuronal ceroid lipofuscinosis
  • p.Ala30Pro No assertion criteria neuronal ceroid lipofuscinosis 8

Pathogenic/Likely pathogenic 15

  • p.Arg204Cys Multiple submitters neuronal ceroid lipofuscinosis 8 northern epilepsy variant
  • p.Arg70Cys Multiple submitters neuronal ceroid lipofuscinosis 8
  • p.Arg70His Multiple submitters neuronal ceroid lipofuscinosis
  • p.Gln99Ter Multiple submitters neuronal ceroid lipofuscinosis 8
  • p.Glu167Ter Multiple submitters Inborn genetic diseases
  • p.Gly237Arg Multiple submitters neuronal ceroid lipofuscinosis
  • p.Leu133Ter Multiple submitters neuronal ceroid lipofuscinosis
  • p.Leu188fs Multiple submitters neuronal ceroid lipofuscinosis
  • p.Met1Val Multiple submitters neuronal ceroid lipofuscinosis
  • p.Met200fs Multiple submitters neuronal ceroid lipofuscinosis 8
  • p.Ser10Ter Multiple submitters neuronal ceroid lipofuscinosis
  • p.Tyr158Cys Multiple submitters neuronal ceroid lipofuscinosis 8
  • p.Ala30fs No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.Ile23fs No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.Lys61del No assertion criteria neuronal ceroid lipofuscinosis 8

Likely pathogenic 28

  • p.Arg204His Multiple submitters neuronal ceroid lipofuscinosis
  • p.Leu207Arg Multiple submitters neuronal ceroid lipofuscinosis
  • c.543+1G>T Single submitter neuronal ceroid lipofuscinosis
  • c.544-1G>T Single submitter neuronal ceroid lipofuscinosis 8
  • p.Ala155Asp Single submitter ⚠
  • p.Arg204Gly Single submitter neuronal ceroid lipofuscinosis
  • p.Arg24Leu Single submitter neuronal ceroid lipofuscinosis
  • p.Asn118fs Single submitter neuronal ceroid lipofuscinosis 8 northern epilepsy variant
  • p.Asp15fs Single submitter neuronal ceroid lipofuscinosis
  • p.Cys203Arg Single submitter neuronal ceroid lipofuscinosis 8
  • p.Cys203Ter Single submitter neuronal ceroid lipofuscinosis 8 northern epilepsy variant
  • p.Gly31Asp Single submitter Inborn genetic diseases
  • p.Lys253Glu Single submitter Seizure
  • p.Thr242fs Single submitter neuronal ceroid lipofuscinosis
  • p.Trp213del Single submitter neuronal ceroid lipofuscinosis 8
  • p.Tyr158Ser Single submitter neuronal ceroid lipofuscinosis
  • c.544-2A>G No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.Ala155Val No assertion criteria neuronal ceroid lipofuscinosis 8 ⚠
  • p.Asp17fs No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.Gln194Arg No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.Gln256Glu No assertion criteria neuronal ceroid lipofuscinosis 8 ⚠
  • p.Gln76Arg No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.His199fs No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.Ile107Ser No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.Leu16fs No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.Met1Thr No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.Thr69fs No assertion criteria neuronal ceroid lipofuscinosis 8
  • p.Trp102Ter No assertion criteria neuronal ceroid lipofuscinosis 8

Conflicting classifications of pathogenicity 28

  • c.544-6A>T Single submitter neuronal ceroid lipofuscinosis
  • p.Ala266Thr Single submitter neuronal ceroid lipofuscinosis ⚠
  • p.Ala4Val Single submitter Inborn genetic diseases ⚠
  • p.Ala51Thr Single submitter neuronal ceroid lipofuscinosis ⚠
  • p.Ala67Val Single submitter neuronal ceroid lipofuscinosis 8 northern epilepsy variant ⚠
  • p.Arg204Leu Single submitter neuronal ceroid lipofuscinosis ⚠
  • p.Arg24His Single submitter neuronal ceroid lipofuscinosis ⚠
  • p.Arg70Pro Single submitter neuronal ceroid lipofuscinosis ⚠
  • p.Asn125Ser Single submitter Inborn genetic diseases ⚠
  • p.Asn152Ser Single submitter Inborn genetic diseases ⚠
  • p.Asn259Ser Single submitter neuronal ceroid lipofuscinosis ⚠
  • p.Asn264Lys Single submitter neuronal ceroid lipofuscinosis 8 ⚠
  • p.Cys174= Single submitter neuronal ceroid lipofuscinosis
  • p.Gln279= Single submitter neuronal ceroid lipofuscinosis
  • p.Gln279Ter Single submitter neuronal ceroid lipofuscinosis
  • p.Glu269Val Single submitter Inborn genetic diseases ⚠
  • p.Gly276fs Single submitter neuronal ceroid lipofuscinosis 8
  • p.His157Arg Single submitter neuronal ceroid lipofuscinosis ⚠
  • p.Leu86= Single submitter neuronal ceroid lipofuscinosis
  • p.Phe216= Single submitter Inborn genetic diseases
  • p.Pro260Leu Single submitter neuronal ceroid lipofuscinosis 8 northern epilepsy variant ⚠
  • p.Thr170Met Single submitter neuronal ceroid lipofuscinosis 8 ⚠
  • p.Thr242Met Single submitter neuronal ceroid lipofuscinosis ⚠
  • p.Thr69= Single submitter Inborn genetic diseases
  • p.Trp213fs Single submitter neuronal ceroid lipofuscinosis 8
  • p.Val175Ile Single submitter neuronal ceroid lipofuscinosis ⚠
  • p.Val261Ala Single submitter neuronal ceroid lipofuscinosis ⚠
  • p.Ser169= No assertion criteria neuronal ceroid lipofuscinosis 8

Benign 12

Benign/Likely benign 7

  • c.-123-4T>C Multiple submitters neuronal ceroid lipofuscinosis 8 northern epilepsy variant
  • p.Arg282= Multiple submitters neuronal ceroid lipofuscinosis
  • p.Arg97His Multiple submitters Inborn genetic diseases
  • p.Asn259= Multiple submitters Inborn genetic diseases
  • p.His106= Multiple submitters Inborn genetic diseases
  • p.His92Tyr Multiple submitters Inborn genetic diseases
  • p.Leu188= Multiple submitters neuronal ceroid lipofuscinosis

Likely benign 170

  • p.Ala93= Multiple submitters neuronal ceroid lipofuscinosis
  • p.Ala96= Multiple submitters neuronal ceroid lipofuscinosis 8 northern epilepsy variant
  • p.Asn277= Multiple submitters neuronal ceroid lipofuscinosis
  • p.Gln100= Multiple submitters neuronal ceroid lipofuscinosis 8 northern epilepsy variant
  • p.Gln99= Multiple submitters neuronal ceroid lipofuscinosis
  • p.Leu165= Multiple submitters neuronal ceroid lipofuscinosis
  • p.Leu222= Multiple submitters Inborn genetic diseases
  • p.Ser5= Multiple submitters neuronal ceroid lipofuscinosis
  • p.Thr111= Multiple submitters Inborn genetic diseases
  • p.Val121= Multiple submitters neuronal ceroid lipofuscinosis
  • p.Val236= Multiple submitters neuronal ceroid lipofuscinosis
  • p.Val62= Multiple submitters neuronal ceroid lipofuscinosis
  • p.Val90= Multiple submitters neuronal ceroid lipofuscinosis
  • c.543+12_543+20dup Single submitter neuronal ceroid lipofuscinosis
  • c.543+12C>G Single submitter neuronal ceroid lipofuscinosis
  • c.543+1329G>A Single submitter
  • c.543+1358A>C Single submitter
  • c.543+13A>C Single submitter neuronal ceroid lipofuscinosis
  • c.543+14T>G Single submitter neuronal ceroid lipofuscinosis
  • c.543+17G>T Single submitter neuronal ceroid lipofuscinosis
  • c.543+19A>C Single submitter neuronal ceroid lipofuscinosis
  • c.543+7G>A Single submitter neuronal ceroid lipofuscinosis
  • c.543+9A>C Single submitter neuronal ceroid lipofuscinosis
  • c.543+9A>G Single submitter neuronal ceroid lipofuscinosis
  • c.544-15C>T Single submitter neuronal ceroid lipofuscinosis
  • c.544-19T>G Single submitter neuronal ceroid lipofuscinosis
  • c.544-4G>A Single submitter neuronal ceroid lipofuscinosis
  • c.544-5T>C Single submitter neuronal ceroid lipofuscinosis
  • c.544-6A>C Single submitter neuronal ceroid lipofuscinosis
  • c.544-8C>A Single submitter neuronal ceroid lipofuscinosis
  • c.-113G>T Single submitter
  • c.-116A>T Single submitter
  • c.-120G>A Single submitter
  • c.-121T>A Single submitter
  • c.-122T>G Single submitter
  • c.-123-328C>G Single submitter
  • c.-124+7G>A Single submitter
  • c.-1A>T Single submitter
  • c.*14G>T Single submitter
  • c.*25G>A Single submitter
  • p.Ala110= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala120= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala142= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala182= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala19= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala266= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala270= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala30= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala4= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala51= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala58= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala67= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala68= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala71= Single submitter neuronal ceroid lipofuscinosis
  • p.Ala79= Single submitter neuronal ceroid lipofuscinosis
  • p.Arg129= Single submitter neuronal ceroid lipofuscinosis
  • p.Arg204= Single submitter neuronal ceroid lipofuscinosis
  • p.Arg24= Single submitter neuronal ceroid lipofuscinosis
  • p.Arg285= Single submitter neuronal ceroid lipofuscinosis
  • p.Arg70= Single submitter neuronal ceroid lipofuscinosis
  • p.Arg97= Single submitter neuronal ceroid lipofuscinosis
  • p.Asn101= Single submitter neuronal ceroid lipofuscinosis
  • p.Asn125= Single submitter neuronal ceroid lipofuscinosis
  • p.Asn246= Single submitter neuronal ceroid lipofuscinosis
  • p.Asn264= Single submitter neuronal ceroid lipofuscinosis
  • p.Asp220= Single submitter neuronal ceroid lipofuscinosis
  • p.Asp6= Single submitter neuronal ceroid lipofuscinosis
  • p.Cys115= Single submitter neuronal ceroid lipofuscinosis
  • p.Cys203= Single submitter neuronal ceroid lipofuscinosis
  • p.Cys42= Single submitter neuronal ceroid lipofuscinosis
  • p.Gln154= Single submitter neuronal ceroid lipofuscinosis
  • p.Gln194= Single submitter neuronal ceroid lipofuscinosis
  • p.Gln76= Single submitter neuronal ceroid lipofuscinosis
  • p.Glu11= Single submitter neuronal ceroid lipofuscinosis
  • p.Glu186= Single submitter neuronal ceroid lipofuscinosis
  • p.Glu60= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly112= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly145= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly156= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly22= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly221= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly278= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly31= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly37= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly7= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly74= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly87= Single submitter neuronal ceroid lipofuscinosis
  • p.Gly98= Single submitter neuronal ceroid lipofuscinosis
  • p.His122= Single submitter neuronal ceroid lipofuscinosis
  • p.His210= Single submitter neuronal ceroid lipofuscinosis
  • p.His251= Single submitter neuronal ceroid lipofuscinosis
  • p.Ile107= Single submitter neuronal ceroid lipofuscinosis
  • p.Ile13= Single submitter neuronal ceroid lipofuscinosis
  • p.Ile137= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu123= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu126= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu133= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu135= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu140= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu153= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu159= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu16= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu164= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu166= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu179= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu192= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu196= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu226= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu228= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu231= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu233= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu235= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu238= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu240= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu258= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu280= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu281= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu45= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu49= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu66= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu82= Single submitter neuronal ceroid lipofuscinosis
  • p.Leu91= Single submitter neuronal ceroid lipofuscinosis
  • p.Lys191= Single submitter neuronal ceroid lipofuscinosis
  • p.Lys253= Single submitter neuronal ceroid lipofuscinosis
  • p.Lys271= Single submitter neuronal ceroid lipofuscinosis
  • p.Lys283= Single submitter neuronal ceroid lipofuscinosis
  • p.Phe128= Single submitter neuronal ceroid lipofuscinosis
  • p.Phe143= Single submitter neuronal ceroid lipofuscinosis
  • p.Phe234= Single submitter neuronal ceroid lipofuscinosis
  • p.Phe265= Single submitter neuronal ceroid lipofuscinosis
  • p.Phe34= Single submitter neuronal ceroid lipofuscinosis
  • p.Pro171= Single submitter neuronal ceroid lipofuscinosis
  • p.Pro247= Single submitter neuronal ceroid lipofuscinosis
  • p.Pro260= Single submitter neuronal ceroid lipofuscinosis
  • p.Pro268= Single submitter neuronal ceroid lipofuscinosis
  • p.Pro274= Single submitter neuronal ceroid lipofuscinosis
  • p.Pro286= Single submitter neuronal ceroid lipofuscinosis
  • p.Pro3= Single submitter neuronal ceroid lipofuscinosis
  • p.Ser124= Single submitter neuronal ceroid lipofuscinosis
  • p.Ser185= Single submitter neuronal ceroid lipofuscinosis
  • p.Ser187= Single submitter neuronal ceroid lipofuscinosis
  • p.Ser225= Single submitter neuronal ceroid lipofuscinosis
  • p.Ser25= Single submitter neuronal ceroid lipofuscinosis
  • p.Ser48= Single submitter neuronal ceroid lipofuscinosis
  • p.Ser77= Single submitter neuronal ceroid lipofuscinosis
  • p.Ter287= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr108= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr109= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr130= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr162= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr163= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr170= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr208= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr232= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr242= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr250= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr26= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr78= Single submitter neuronal ceroid lipofuscinosis
  • p.Thr9= Single submitter neuronal ceroid lipofuscinosis
  • p.Tyr158= Single submitter neuronal ceroid lipofuscinosis
  • p.Tyr248= Single submitter neuronal ceroid lipofuscinosis
  • p.Tyr53= Single submitter neuronal ceroid lipofuscinosis
  • p.Val136= Single submitter neuronal ceroid lipofuscinosis
  • p.Val151= Single submitter neuronal ceroid lipofuscinosis
  • p.Val206= Single submitter neuronal ceroid lipofuscinosis
  • p.Val223= Single submitter neuronal ceroid lipofuscinosis
  • p.Val29= Single submitter neuronal ceroid lipofuscinosis
  • p.Val38= Single submitter neuronal ceroid lipofuscinosis
  • p.Val41= Single submitter neuronal ceroid lipofuscinosis
  • p.Val72= Single submitter neuronal ceroid lipofuscinosis

Uncertain significance 240