COL6A3 — 3824 ClinVar variants

All ClinVar germline COL6A3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 1204 flagged for review →

110 Pathogenic · 26 Pathogenic/Likely pathogenic · 65 Likely pathogenic · 650 Conflicting · 179 Benign · 75 Benign/Likely benign · 1029 Likely benign · 1690 Uncertain significance

Full COL6A3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 1204

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 216

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification. · showing the 150 best-reviewed of 216

Predictors lean, ClinVar uncertain 714

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 714

Predictors split 273

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 273

All COL6A3 variants

Pathogenic 110

Pathogenic/Likely pathogenic 26

Likely pathogenic 65

Conflicting classifications of pathogenicity 650

Showing the top 300 by review status; the full set is in the sitemap.

Benign 179

Benign/Likely benign 75

  • c.1313-17A>G Multiple submitters Bethlem myopathy 1A
  • c.3071-16G>A Multiple submitters Bethlem myopathy 1A
  • c.4285+17G>A Multiple submitters Bethlem myopathy 1A
  • c.4285+9G>A Multiple submitters collagen 6-related myopathy
  • c.6064-6C>T Multiple submitters Bethlem myopathy 1A
  • c.6310-18C>T Multiple submitters Bethlem myopathy 1A
  • c.6408+44A>G Multiple submitters
  • c.6592-27del Multiple submitters
  • c.6879+15C>T Multiple submitters collagen 6-related myopathy
  • c.6879+33C>T Multiple submitters
  • c.709+11C>T Multiple submitters Bethlem myopathy 1A
  • c.710-20dup Multiple submitters Bethlem myopathy 1A
  • c.7162+48G>A Multiple submitters
  • c.7668+21G>C Multiple submitters
  • c.8465-7dup Multiple submitters Bethlem myopathy 1A
  • c.91+11G>C Multiple submitters collagen 6-related myopathy
  • c.9329-4A>T Multiple submitters collagen 6-related myopathy
  • p.2878TTTKPVT[2] Multiple submitters Bethlem myopathy 1A
  • p.Ala1373Thr Multiple submitters Bethlem myopathy 1A ⚠
  • p.Ala1532= Multiple submitters Bethlem myopathy 1A
  • p.Ala2018Val Multiple submitters Bethlem myopathy 1C
  • p.Ala2643Val Multiple submitters collagen 6-related myopathy
  • p.Ala2935Val Multiple submitters collagen 6-related myopathy
  • p.Ala2941Val Multiple submitters collagen 6-related myopathy
  • p.Ala587= Multiple submitters collagen 6-related myopathy
  • p.Ala596Ser Multiple submitters collagen 6-related myopathy
  • p.Arg1064Gln Multiple submitters collagen 6-related myopathy
  • p.Arg1395Trp Multiple submitters Ullrich congenital muscular dystrophy 1A
  • p.Arg1632Gln Multiple submitters Bethlem myopathy 1A
  • p.Arg2549Trp Multiple submitters Bethlem myopathy 1A
  • p.Arg3043His Multiple submitters collagen 6-related myopathy
  • p.Arg677His Multiple submitters collagen 6-related myopathy
  • p.Asn1018= Multiple submitters collagen 6-related myopathy
  • p.Asp1029= Multiple submitters collagen 6-related myopathy
  • p.Asp1090= Multiple submitters collagen 6-related myopathy
  • p.Asp1904= Multiple submitters Bethlem myopathy 1A
  • p.Asp410Asn Multiple submitters collagen 6-related myopathy
  • p.Asp491His Multiple submitters collagen 6-related myopathy
  • p.Asp563Gly Multiple submitters collagen 6-related myopathy
  • p.Cys3137= Multiple submitters collagen 6-related myopathy
  • p.Gln1561= Multiple submitters collagen 6-related myopathy
  • p.Glu2436= Multiple submitters collagen 6-related myopathy
  • p.Glu2453= Multiple submitters Bethlem myopathy 1A
  • p.Glu2782= Multiple submitters collagen 6-related myopathy
  • p.Gly1335= Multiple submitters Bethlem myopathy 1A
  • p.Gly735= Multiple submitters collagen 6-related myopathy
  • p.His2669= Multiple submitters collagen 6-related myopathy
  • p.Ile1369= Multiple submitters collagen 6-related myopathy
  • p.Ile2593= Multiple submitters collagen 6-related myopathy
  • p.Leu411Val Multiple submitters collagen 6-related myopathy
  • p.Leu416= Multiple submitters Bethlem myopathy 1A
  • p.Lys1754Arg Multiple submitters collagen 6-related myopathy
  • p.Lys3006Arg Multiple submitters collagen 6-related myopathy
  • p.Phe2795= Multiple submitters collagen 6-related myopathy
  • p.Phe597= Multiple submitters collagen 6-related myopathy
  • p.Pro1407= Multiple submitters Bethlem myopathy 1A
  • p.Pro1687Ser Multiple submitters Bethlem myopathy 1A
  • p.Pro2206= Multiple submitters collagen 6-related myopathy
  • p.Pro3082Arg Multiple submitters Bethlem myopathy 1A
  • p.Ser1344= Multiple submitters collagen 6-related myopathy
  • p.Ser1390Leu Multiple submitters collagen 6-related myopathy
  • p.Ser1870Asn Multiple submitters Bethlem myopathy 1A
  • p.Ser1940= Multiple submitters collagen 6-related myopathy
  • p.Ser3004= Multiple submitters Bethlem myopathy 1A
  • p.Ser821= Multiple submitters Bethlem myopathy 1A
  • p.Thr1140= Multiple submitters collagen 6-related myopathy
  • p.Thr3023= Multiple submitters collagen 6-related myopathy
  • p.Thr394= Multiple submitters Bethlem myopathy 1A
  • p.Thr98Ser Multiple submitters Bethlem myopathy 1A
  • p.Val1030Met Multiple submitters collagen 6-related myopathy
  • p.Val12Ile Multiple submitters Inborn genetic diseases
  • p.Val1364Met Multiple submitters Bethlem myopathy 1A
  • p.Val2820Ile Multiple submitters Bethlem myopathy 1A
  • p.Val2858Ile Multiple submitters collagen 6-related myopathy
  • p.Val342Met Multiple submitters collagen 6-related myopathy

Likely benign 1029

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 1690

Showing the top 300 by review status; the full set is in the sitemap.